Sequence details NCBI ID: XM_004843746.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ddx54
Gene Name DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, transcript variant X1
Entrez Gene ID 101726725

Database interlinks

Part of NW_004624747.1 (Scaffold)

For more information consult the page for NW_004624747.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

DDX54 ENSCPOG00000020649 (Guinea pig)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box polypeptide 54

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020685, Guinea pig)

Protein Percentage 90.07%
CDS Percentage 89.88%
Ka/Ks Ratio 0.08724 (Ka = 0.0481, Ks = 0.5511)

DDX54 ENSG00000123064 (Human)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box polypeptide 54

External Links

Gene Match (Ensembl Protein ID: ENSP00000323858, Human)

Protein Percentage 87.79%
CDS Percentage 86.49%
Ka/Ks Ratio 0.06694 (Ka = 0.0581, Ks = 0.8686)

Ddx54 ENSMUSG00000029599 (Mouse)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box polypeptide 54

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000031598, Mouse)

Protein Percentage 85.76%
CDS Percentage 82.85%
Ka/Ks Ratio 0.06573 (Ka = 0.0775, Ks = 1.179)

Ddx54 ENSRNOG00000001377 (Rat)

Gene Details

DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 (Ddx54), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000001859, Rat)

Protein Percentage 85.3%
CDS Percentage 82.13%
Ka/Ks Ratio 0.0668 (Ka = 0.0809, Ks = 1.2105)

Genome Location

Sequence Coding sequence

Length: 2655 bp    Location: 19264876..19279251   Strand: +
Raw sequence   
>XM_004843746.1
ATGGCGGCCGGCAAACGTGCGGCGGCCGGGCCGCGGTCGCCAGTTGCCATGGCCCAGTGGAAGAAGAAGAAGGGGCTCCGAAAGCGCCGGGGCGCAGTCTCCCAGGCCCACGGCAGCGACTCGGAGGATGGCGAGTTTGAGATTCAGGCGGAAGATGACGCCCGGGCGCGGAAGCTACCTTCTGGGACAGTGATGATGCGAGGACCTGGCCAGCCCCTGCCCAGCTTCCCCACCTCGGAATGCACCTCAGACGTGGAGCTGGACACGCGGGAGATGGTGCGGGCACAAAACAAGAAGAAGAAGAAGTCTGGGGGCTTCCAGTCCATGGGCTTGAGCTACCTCGTGTTCAAGGGCATCATGAAGAAGGGCTACAAAGTGCCGACGCCCATCCAGAGGAAGACCATCCCGGTGATCCTAGATGGCAAGGACACGGTGGCCATGGCGCGGACAGGCAGCGGCAAGACGGCGTGCTTCCTCATCCCCATGTTCGAGCGGCTCAAGACCCGGAGTGCCCAGACCGGCGCCCGGGCCCTCATCCTCTCGCCCACCCGGGAGCTGGCCCTGCAGACCATGAAGTTCACGAAGGAGCTGGGCAGGTTCACCGGCCTCAAGACAGCCCTGATCCTGGGCGGGGACAAAATGGAGGACCAGTTTGCAGCCCTGCACGAGAACCCCGACATAATCATCGCCACTCCTGGCCGGCTGGTGCACGTGGCCGTGGAGATGAACCTGAAGCTGCACAGTGTGGAGTACGTGGTTTTCGATGAAGCGGACAGGCTCTTTGAGATGGGCTTTGCTGAGCAGCTGCAGGAGATCATCAGCCGCCTCCCTGGGGGCCACCAGACGGTGCTGTTCTCGGCCACACTGCCCAAGCTGCTGGTGGAGTTCGCCCGCGCAGGCCTCACGGAACCCGTGCTCATCCGGCTGGACGTGGACGCCAAGCTCAACGAGCAGCTCAAGACCTCCTTCTTCCTGGTGCGGGAGGACACCAAAGCTGCCGTGCTGCTGCACCTGCTGCGCACCGTGGTGCGCCCCCAGGACCAGACTGTGGTGTTTGTGGCCACCAAGCACCACGCGGAGTACCTGCAGGAGCTGCTGAGCACCCAGCGCGTGAGCTGCACCCACATCTACAGCGCTCTGGACCAGACGGCCCGCAAGATCAACCTGGCCAGGTTCACGCACGGCAAGTGCTCCACGCTCATCGTCACCGACCTGGCCGCGCGCGGCCTGGACATCCCACTGCTGGACAACGTCATCAACTACAGCTTCCCCGCCAAGGGCAAGCTCTTTCTGCACCGAGTGGGCCGTGTGGCCCGGGCTGGCCGGAGTGGCACTGCCTACTCCTTGGTGTCCCCGGATGAGGTCCCCTACCTGCTGGACCTGCACCTGTTTGTGGGCCGCACCCTCAGTCTTGCTCCCCCTAACCAGGAGCCCACAGGTGCAGGCAGTGTGGACGGCGTGCTGGGCCGGGTGCCACAGAGCGTGGTAGATGATGAGGACGGCGGCCTGCGGGCTGCGCTGGAGGTGTCGCTGGAGCTGCGGAGCCTGGGCCGGGTGGCTGACAACGCACAGCAGCAGTATGTGCGCTCGCGGCCCGCGCCCTCGCCCGAGTCCATCAAGAGGGCCAAGGAGCTGGACCTGGTGGCGCTGGGCCTGCACCCGCTCTTCAGCTCGGGCTTCGAGGAGGAGGAGCTGCAGCGGCTGAGGCTGGTGGACAGCATCCGGCAGTACCGCTCCCGTGCGACTATCTTCGAGATTAGCGCCTCTAGCCAGGACCTCAGCAGCCAGGTGATGCGCGCCAAGCGGCAGAAGGACCACAGAGCCATCACTCGCTTCCAGCAGGGGCGGCAGGAACGACAGGAAGGCCCGGCTGGTCCTGCCCCTGCCTGCCCCACGCTGCAGGAGGAGCCGCCAGAGAAGGAAGAGGACGCCGCCGAGAGCATGGAGGACGTCTTCACTGAAGTTGTGGGCCAGAAGCGGCCGAGGCCAGGCCCTGATGGAGGAGCCAAGAGGCGGAGGGAGGAGGCCCGGCAGCGGGACCAGGAGTTCTACATCCCCTACCGGCCCAAGGACTTCGACAGCGAACGGGGCCTGAGCGTCGGGAGTGCCGCGGGGGCCTTCGAGCAGCAGGTGGCCGGTGCAGTCCTGGACCTGATGGGGGACGAGTCACAGAACCTGACCCGAGGCCAGCAGCAGCTCAAGTGGGACCGGAAGAAGAAGCGGTTTGTGGGACAGGCGGGACAGGATGACAAAAAGAAGATCAAGACTGAGAGTGGCCGCTACATCAGCAGCTCCTACAGGCGTGACCTCTACCAGAAGTGGAAGCAGAAACAGAAAATCGATGGTCGAGACTCAGAGGAGGAAGGACCATCTGACCGTGGAGGCCCTCCGCGGAGAGGTGGGAAGCGAGGGCGTGGCCAAGGTGCATCCCAGCCCCGTGCCCCCAGCACCCCCACAGGCCGCGTTCGCTCTGAGCTCAAGACCAAGCAACAGATCCTGAAGCAGCGGCGCCGGGCCCAGAAGCTGCGCTTCCTGCAGCGCGGCGGCCTCAAGCAGCTGTCGGCTCGCAACCGCCGCCGGGCCCAGGAACTGCGGCTGGGTGCCTTCGGCCGGGGAGCCCCCTCTAGGAAGGGCAAGATGAGAAAGAGGATGTGA

Related Sequences

XP_004843803.1 Protein

Ddx54 PREDICTED: ATP-dependent RNA helicase DDX54 isoform X1 [Heterocephalus glaber]

Length: 884 aa      View alignments
>XP_004843803.1
MAAGKRAAAGPRSPVAMAQWKKKKGLRKRRGAVSQAHGSDSEDGEFEIQAEDDARARKLPSGTVMMRGPGQPLPSFPTSECTSDVELDTREMVRAQNKKKKKSGGFQSMGLSYLVFKGIMKKGYKVPTPIQRKTIPVILDGKDTVAMARTGSGKTACFLIPMFERLKTRSAQTGARALILSPTRELALQTMKFTKELGRFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLHSVEYVVFDEADRLFEMGFAEQLQEIISRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKAAVLLHLLRTVVRPQDQTVVFVATKHHAEYLQELLSTQRVSCTHIYSALDQTARKINLARFTHGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVSPDEVPYLLDLHLFVGRTLSLAPPNQEPTGAGSVDGVLGRVPQSVVDDEDGGLRAALEVSLELRSLGRVADNAQQQYVRSRPAPSPESIKRAKELDLVALGLHPLFSSGFEEEELQRLRLVDSIRQYRSRATIFEISASSQDLSSQVMRAKRQKDHRAITRFQQGRQERQEGPAGPAPACPTLQEEPPEKEEDAAESMEDVFTEVVGQKRPRPGPDGGAKRRREEARQRDQEFYIPYRPKDFDSERGLSVGSAAGAFEQQVAGAVLDLMGDESQNLTRGQQQLKWDRKKKRFVGQAGQDDKKKIKTESGRYISSSYRRDLYQKWKQKQKIDGRDSEEEGPSDRGGPPRRGGKRGRGQGASQPRAPSTPTGRVRSELKTKQQILKQRRRAQKLRFLQRGGLKQLSARNRRRAQELRLGAFGRGAPSRKGKMRKRM