Details from NCBI annotation

Gene Symbol Hnf1a
Gene Name HNF1 homeobox A, transcript variant X1
Entrez Gene ID 101720629

Database interlinks

Part of NW_004624747.1 (Scaffold)

For more information consult the page for NW_004624747.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HNF1A ENSCPOG00000007242 (Guinea pig)

Gene Details

HNF1 homeobox A

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006525, Guinea pig)

Protein Percentage 97.61%
CDS Percentage 94.21%
Ka/Ks Ratio 0.03844 (Ka = 0.0105, Ks = 0.2743)

HNF1A ENSG00000135100 (Human)

Gene Details

HNF1 homeobox A

External Links

Gene Match (Ensembl Protein ID: ENSP00000257555, Human)

Protein Percentage 96.35%
CDS Percentage 91.44%
Ka/Ks Ratio 0.03705 (Ka = 0.0179, Ks = 0.4827)

Hnf1a ENSMUSG00000029556 (Mouse)

Gene Details

HNF1 homeobox A

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000031535, Mouse)

Protein Percentage 95.54%
CDS Percentage 88.0%
Ka/Ks Ratio 0.02939 (Ka = 0.0234, Ks = 0.7954)

Hnf1a ENSRNOG00000001183 (Rat)

Gene Details

HNF1 homeobox A (Hnf1a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000001565, Rat)

Protein Percentage 95.7%
CDS Percentage 88.75%
Ka/Ks Ratio 0.03162 (Ka = 0.0226, Ks = 0.7133)

Genome Location

Sequence Coding sequence

Length: 1896 bp    Location: 12746724..12717707   Strand: -
>XM_004843644.1
ATGGTTTCTAAACTGAGCCAGCTGCAGACAGAGCTCCTGGCTGCCCTGCTGGAATCGGGCCTGAGCAAAGAGGCGCTGATCCAGGCCTTGGGCGAGCCGGGACCCTACCTGATGGCTGGAGACGGCCCCCTGGACAAGGGCGAGAGCTGCGGCGGGACTCGAGGGGAGCTGGCTGAGCTGCCCAATGGGCTGGGGGAGACGCGGGGCTCCGAGGACGAGACGGATGACGATGGGGAAGACTTCACGCCACCCATCCTCAAGGAACTGGAGAATCTCAGCCCCGAGGAGGCGGCCCACCAGAAAGCCGTGGTGGAGACCCTGCTGCAGGAAGACCCATGGCGCGTGGCAAAGATGGTCAAGTCCTACCTGCAGCAGCACAACATTCCGCAGCGGGAGGTGGTCGACACCACCGGCCTCAACCAGTCCCACCTGTCCCAGCACCTCAACAAGGGGACGCCCATGAAGACGCAGAAGCGCGCCGCGCTGTACACCTGGTACGTCCGCAAGCAGCGAGAGGTGGCGCAGCAGTTCACCCATGCAGGGCAGGGTGGGCTGATCGAAGAGCCCACTGGTGATGAGCTGCCTACCAAGAAGGGGCGGAGAAACCGTTTCAAGTGGGGCCCAGCCTCCCAGCAGATCCTGTTCCAGGCCTACGAGAGGCAGAAGAACCCCAGCAAGGAGGAGCGAGAGACCTTAGTGGAGGAGTGCAATCGGGCAGAGTGCATCCAGAGAGGGGTGTCACCATCACAGGCACAGGGGCTGGGCTCCAACCTCGTCACCGAGGTTCGTGTCTACAACTGGTTTGCCAACCGGCGCAAGGAAGAAGCTTTTCGGCACAAGCTAGCCATGGACACATACAGCGGGCCCCCACCGGGGCCAGGCCCAGGGCCCGCACTGCCGGCCCACAGCTCCCCTGGCCTGCCACCATCTGCTCTTTCCCCCAGTAAGGTCCACGGCGTGCGCTATGGACAGCCTGCGGCCAGTGAGGCGGCAGAGGTGCCCTCGAGCAGTGGTGGCCCCTTAGTGACAGTGTCTACACCCCTACACCAAGTGTCCCCCACAGGCCTGGAGCCCAGCCACAGCCTGCTGAGCACTGAAGCCAAGCTGGTCTCAGCAACTGGGGGGCCCCTGCCCCCCGTCAGCACCCTGACAGCTCTGCATAGCTTGGAACAGACATCCCCAGGCCTCAACCAGCAGCCCCAGAACCTCATCATGGCCTCACTGCCCGGTGTCATGACTATTGGGCCTGGTGAGCCTGCCTCTCTGGGCCCCACGTTCAGCAACACAGGTGCCTCCACCCTGGTTATTGGCCTGGCCTCCACTCAGGCCCAGAGTGTGCCTGTCATCAACAGCATGGGCAGCAGCCTGACTACCCTGCAGCCGGTCCAGTTCTCCCAGCCGCTGCACCCTTCTTACCAGCAGCCTCTCATGCCACCCGTGCAGAGCCACGTAGCCCAGAACCCCTTCATGGCGACCATGGCTCAGCTGCAGAGCCCCCACGCCCTCTATAGCCACAAGCCTGAGGTGGCCCAGTACGCGCACACCGGGCTGCTTCAGCAGACCATGCTCATCACCGACACCACCAACCTGAGCGCCCTCGCCAGCCTCACACCCACCAAGCAGGTCTTCACCTCAGACACGGAGGCCTCCAGTGAGTCGGGGCTTCATGCACCAGTGTCCCCAGCCACCACGATCCACATCCCCAGCCAGGACCCTGGTGGCATCCAGCATCTGCAGCCTGCCCACCGGCTCAGCACTAGCCCCACAGTGTCCTCCAGCAGCCTGGTGTTGTACCAGAGCTCCGACTCCACCAACGGCCACAGCCACCTGCTGCCATCCAGCCACAGTGTCATCGAGACCTTCATCTCCACACAGATGGCTTCCTCCTCCCAGTAA

Related Sequences

XP_004843701.1 Protein

Hnf1a PREDICTED: hepatocyte nuclear factor 1-alpha isoform X1 [Heterocephalus glaber]

Length: 631 aa      View alignments
>XP_004843701.1
MVSKLSQLQTELLAALLESGLSKEALIQALGEPGPYLMAGDGPLDKGESCGGTRGELAELPNGLGETRGSEDETDDDGEDFTPPILKELENLSPEEAAHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRHKLAMDTYSGPPPGPGPGPALPAHSSPGLPPSALSPSKVHGVRYGQPAASEAAEVPSSSGGPLVTVSTPLHQVSPTGLEPSHSLLSTEAKLVSATGGPLPPVSTLTALHSLEQTSPGLNQQPQNLIMASLPGVMTIGPGEPASLGPTFSNTGASTLVIGLASTQAQSVPVINSMGSSLTTLQPVQFSQPLHPSYQQPLMPPVQSHVAQNPFMATMAQLQSPHALYSHKPEVAQYAHTGLLQQTMLITDTTNLSALASLTPTKQVFTSDTEASSESGLHAPVSPATTIHIPSQDPGGIQHLQPAHRLSTSPTVSSSSLVLYQSSDSTNGHSHLLPSSHSVIETFISTQMASSSQ