Sequence details NCBI ID: XM_004843579.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Smarcb1
Gene Name SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, transcript variant X1
Entrez Gene ID 101698715

Database interlinks

Part of NW_004624747.1 (Scaffold)

For more information consult the page for NW_004624747.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SMARCB1 ENSCPOG00000014615 (Guinea pig)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013169, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 96.19%
Ka/Ks Ratio 0.001 (Ka = 0.0002, Ks = 0.1864)

SMARCB1 ENSG00000099956 (Human)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000263121, Human)

Protein Percentage 100.0%
CDS Percentage 93.16%
Ka/Ks Ratio 0.001 (Ka = 0.0004, Ks = 0.4074)

Smarcb1 ENSMUSG00000000902 (Mouse)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000000925, Mouse)

Protein Percentage 100.0%
CDS Percentage 92.12%
Ka/Ks Ratio 0.001 (Ka = 0.0005, Ks = 0.4754)

Smarcb1 ENSRNOG00000028302 (Rat)

Gene Details

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 (Smarcb1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000034916, Rat)

Protein Percentage 100.0%
CDS Percentage 91.93%
Ka/Ks Ratio 0.001 (Ka = 0.0005, Ks = 0.4982)

Genome Location

Sequence Coding sequence

Length: 1158 bp    Location: 10396711..10361267   Strand: -
Raw sequence   
>XM_004843579.1
ATGATGATGATGGCATTGAGCAAGACCTTCGGGCAGAAGCCCGTCAAGTTCCAGCTGGAGGACGACGGCGAATTCTACATGATCGGCTCGGAGGTGGGAAACTACCTCCGTATGTTCCGAGGTTCTCTGTACAAGAGATACCCCTCACTCTGGAGGCGACTAGCCACTGTGGAAGAGAGGAAGAAAATAGTTGCATCGTCACATGGTAAAAAAACAAAACCTAACACTAAGGATCATGGATATACCACCCTTGCCACCAGTGTGACTCTGTTAAAAGCTTCTGAGGTGGAAGAGATTCTTGACGGCAATGATGAGAAGTATAAGGCTGTGTCCATCAGCACGGAACCCCCCACCTACCTCAGGGAACAGAAGGCCAAGAGGAACAGCCAGTGGGTCCCCACCCTGCCCAACAGCTCCCATCATCTGGATGCTGTGCCATGTTCCACCACCATCAATAGGAACCGCATGGGCCGGGACAAGAAGAGAACCTTCCCTCTGTGCTTTGATGACCATGACCCAGCTGTGATTCATGAGAATGCATCTCAGCCTGAGGTGCTAGTGCCCATCCGGCTGGACATGGAGATCGATGGGCAGAAGCTGCGGGATGCCTTTACCTGGAACATGAATGAGAAGCTGATGACCCCTGAGATGTTTTCAGAAATCCTCTGTGATGACTTGGATTTGAACCCACTGACATTTGTACCAGCCATTGCCTCTGCCATTAGACAGCAGATTGAGTCCTACCCCACAGACAGCATCCTGGAGGACCAGTCTGACCAGCGTGTTATCATCAAGTTGAACATCCACGTGGGAAACATCTCCCTGGTGGACCAGTTTGAGTGGGACATGTCGGAGAAGGAGAACTCACCAGAGAAGTTTGCCCTGAAGCTGTGCTCAGAGCTGGGGCTGGGCGGGGAGTTTGTCACCACCATCGCTTACAGTATCCGGGGACAACTGAGCTGGCACCAGAAGACCTACGCCTTCAGTGAGAACCCCTTGCCCACGGTGGAGATTGCCATCCGGAACACAGGCGATGCTGACCAGTGGTGCCCACTGCTGGAGACTCTGACTGATGCTGAGATGGAGAAGAAGATCCGAGACCAGGACAGAAATACAAGGCGGATGAGGCGTCTTGCCAACACTGCCCCAGCCTGGTGA

Related Sequences

XP_004843636.1 Protein

Smarcb1 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1 [Heterocephalus glaber]

Length: 385 aa      View alignments
>XP_004843636.1
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW