Sequence details NCBI ID: XM_004843539.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Specc1l
Gene Name sperm antigen with calponin homology and coiled-coil domains 1-like, transcript variant X2
Entrez Gene ID 101717271

Database interlinks

Part of NW_004624747.1 (Scaffold)

For more information consult the page for NW_004624747.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000007308 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006586, Guinea pig)

Protein Percentage 98.48%
CDS Percentage 95.26%
Ka/Ks Ratio 0.04717 (Ka = 0.008, Ks = 0.1703)

Specc1l ENSMUSG00000033444 (Mouse)

Gene Details

sperm antigen with calponin homology and coiled-coil domains 1-like

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000045099, Mouse)

Protein Percentage 95.26%
CDS Percentage 88.13%
Ka/Ks Ratio 0.04488 (Ka = 0.0245, Ks = 0.5453)

Specc1l ENSRNOG00000001303 (Rat)

Gene Details

sperm antigen with calponin homology and coiled-coil domains 1-like (Specc1l), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000001764, Rat)

Protein Percentage 94.81%
CDS Percentage 86.94%
Ka/Ks Ratio 0.04146 (Ka = 0.0265, Ks = 0.6392)

Genome Location

Sequence Coding sequence

Length: 3357 bp    Location: 9687379..9835609   Strand: +
Raw sequence   
>XM_004843539.1
ATGAAGAAAGCAAGCAGGAGTGTTGGCTCAGTGCCTAAGGTGTCTGGGACAAGTAAAACACAAACGGTAGAGAAAATTAAGCCTGAAAACAGCTCTTCAGCATCAACAGGAGGAAAATTTGTAAAACCTGGAACTGCAGCATTATTGTCAAAGACCAAGAGCAGTGATGATCTTTTAGCTGGAATGGCTGGAGGGGTAACAGTGACTAATGGTGTTAAGGGAAAGAAAAGTACCTGCCCATCTGCAGCATCTTCAGCATCTGCCCCTGCCATGACCACTGTGGAGAACAAACCTAAGATCAACACAGGCACAAGTTCTTCAACCAAACGGAGCACTTCTGCAGGTAGTAAAGAATCCAGTTCTACTAGAGAAAGATTACGTGAACGTACCCGACTAAACCAGAGCAAAAAACTACCTTCTGCAGGTCAGGGAGCTAACGATGTGGCATTGGCTAAACGTTCCCGCAGTCGCACTGCTATGGAATGTGATGTTCGTATGAGCAAGTCTAAATCAGACAATCAGATCAGTGACAAAGCTGCTTTAGAAGCTAAAGTGAAAGATCTTCTTACACTGGCAAAAACCAAAGATGTGGAAATTTTACATTTGAGAAATGAACTCCGAGACATGCGTGCTCAACTGGGCATTAATGAAGATCATTCTGAGGGTGATGAAAAGTCTGAGGAGAAGGAAACTGTTACTGCTCACCAGCCAACTGATGTCGAGTCCACTTTATTGCAGTTGCAAGAACAGAATACTGCCATCCGTGAAGAACTCAACCAGTTGAAAAATGAAAACAGAATGTTAAAGGACAGGTTGAATGCACTGGGCTTTTCCCTAGAACAGAGGTTAGATAATTCTGAAAAACTGTTTGGCTATCAGTCCCTGAGCCCAGAAATTGCCCCTGGTAACCAGAGTGATGGAGGAGGAACTCTGACTTCTTCTGTGGAAGGCTCTGCACCGGGGTCAGTGGAGGATCTCTTGAGTCAAGATGAAAATACACTCATGGATCATCAGCACAGTAACTCTATGGATAACCTAGACAGTGAGTGCAGTGAGGTTTATCAGCCTCTCACCTCTAGCGACGATGCCCTCGATGCACCATCATCTTCAGAGTCAGAGGGTATTCCAAGCATGGAGCGCTCTCGTAAAGGGAGCAGTGGGAATGCGAGTGAAGTGTCTGTTGCTTGCTTAACAGAACGGATACACCAGATGGAAGAGAACCAGCACAGTACAAGTGAGGAACTACAGGCAACTCTACAGGAACTAGCTGATTTGCAGCAGATTACCCAAGAGCTAAATAGTGAAAATGAAAGGCTTGGGGAGGAGAAAGTCATTCTTATGGAGTCTTTGTGTCAACAAAGTGATAAGTTGGAACATTTTAGCCGGCAGATTGAATATTTCCGTTCCCTTCTAGATGAGCATCATATTTCTTATGTTATAGATGAAGATGTAAAAAGTGGACGCTATATGGAATTAGAGCAGCGTTACATGGACTTAGCTGAGAATGCCCGTTTTGAGCGAGAGCAGCTTCTTGGTGTCCAGCAGCATTTAAGTAATACTTTAAAAATGGCAGAACAAGACAACAAGGAAGCTCAAGAAATGATAGGTGCACTCAAAGAACGCAGTCACCACATGGAGCGAATTATTGAGTCTGAGCAGAAAGGCAAAGCAGCCCTGGCAGCAACCTTAGAGGAGTACAAAGCCACAGTGTCCAGCGACCAGATAGAGATGAATCGCCTGAAGGCCCAGCTGGAGAATGAAAAGCAGAAAGTGGCTGAACTATATTCTATCCATAACTCTGGAGACAAATCTGATATTCAGGATCTCTTGGAGAGTGTTAGGCTGGACAAAGAAAAGGCAGAGACTTTGGCTAGTAGCCTGCAGGAAGATCTGGCTCATACCCGAAATGATGCCAATCGATTACAGGACACCATTGCCAAGGTAGAGGACGAATACCGAGCCTTCCAAGAAGAAGCTAAGAAACAAATTGAAGATTTGAATTTGACATTAGAAAAACTAAGATCAGAGCTGGAGGAAAAAGAGACAGAAAGGAGTGATATGAAAGAAACTATCTTTGAGCTTGAAGATGAAGTAGAACAACATAGAGCTGTGAAACTTCATGACAACCTCATTATTTCTGATTTAGAGAATACAGTTAAAAAACTCCAGGACCAAAAACATGACATGGAAAGAGAAATCAAGACACTTCACAGGAGACTTCGAGAAGAATCTGCAGAATGGCGGCAGTTTCAAGCTGATCTACAGACTGCAGTAGTCATTGCAAATGACATTAAATCTGAAGCCCAAGAGGAGATTGGCGATCTGAAGCGCCGGTTACATGAGGCTCAGGAAAAGAATGAGAAACTCACAAAAGAATTGGAGGAAATAAAATCACGCAAGCAAGAGGAGGAGCGAGGGCGAGTATACAATTACATGAATGCTGTTGAGAGAGATTTGGCAGCCTTAAGGCAAGGGATGGGACTAAGTAGAAGGTCCTCGACTTCCTCAGAGCCGACTCCTACAGTAAAAACCCTCATTAAGTCCTTTGACAGTGCATCTCAAGTACCAAACCCTGCTGCAGCTACAATTCCTCGAACACCTCTGAGTCCAAGTCCTATGAAAACCCCTCCTGCGGCAGCTGTATCTCCCATGCAGAGACATTCCATAAGCGGACCAATCTCAACATCCAAGCCCCTCACAGCCTTGTCAGATAAGAGACCAAACTATGGGGAGATCCCAGTTCAAGAACATCTGTTAAGAACATCATCAACCAGCCGACCTGCTTCTCTCCCAAGAGTGTCTGCTATGGAAAGTGCCAAGACCATCTCAGTGTCTCGAAGAAGTAGTGAGGAAATAAAACGGGACATCTCTGCACCTGAGGGAGCGTCGCCAGCCTCTCTTATGGCTATGGGAACCACATCACCACAGCTGTCCTTGTCCTCCTCTCCCACAGCATCTGTGACCCCAACCACTCGAAGCCGGATAAGAGAAGAAAGGAAAGACCCTCTCTCAGCATTGGCAAGAGAATATGGAGGATCGAAGAGGAATGCCTTGTTGAAGTGGTGCCAGAAAAAAACAGAAGGCTATCAGAATATTGACATCACAAACTTCAGCAGCAGCTGGAATGATGGGCTGGCCTTCTGCGCACTCCTGCATACATATCTTCCAGCCCACATTCCATATCAAGAACTGAATAGCCAAGATAAGAAAAGGAACTTCACACTGGCCTTCCAGGCAGCTGAAAGTGTTGGCATCAAATCCACACTGGACATTAATGAGATGGTACGCACCGAACGGCCAGATTGGCAAAATGTCATGCTGTACGTGACGGCAATCTACAAGTACTTTGAAACTTGA

Related Sequences

XP_004843596.1 Protein

Specc1l PREDICTED: cytospin-A isoform X2 [Heterocephalus glaber]

Length: 1118 aa      
>XP_004843596.1
MKKASRSVGSVPKVSGTSKTQTVEKIKPENSSSASTGGKFVKPGTAALLSKTKSSDDLLAGMAGGVTVTNGVKGKKSTCPSAASSASAPAMTTVENKPKINTGTSSSTKRSTSAGSKESSSTRERLRERTRLNQSKKLPSAGQGANDVALAKRSRSRTAMECDVRMSKSKSDNQISDKAALEAKVKDLLTLAKTKDVEILHLRNELRDMRAQLGINEDHSEGDEKSEEKETVTAHQPTDVESTLLQLQEQNTAIREELNQLKNENRMLKDRLNALGFSLEQRLDNSEKLFGYQSLSPEIAPGNQSDGGGTLTSSVEGSAPGSVEDLLSQDENTLMDHQHSNSMDNLDSECSEVYQPLTSSDDALDAPSSSESEGIPSMERSRKGSSGNASEVSVACLTERIHQMEENQHSTSEELQATLQELADLQQITQELNSENERLGEEKVILMESLCQQSDKLEHFSRQIEYFRSLLDEHHISYVIDEDVKSGRYMELEQRYMDLAENARFEREQLLGVQQHLSNTLKMAEQDNKEAQEMIGALKERSHHMERIIESEQKGKAALAATLEEYKATVSSDQIEMNRLKAQLENEKQKVAELYSIHNSGDKSDIQDLLESVRLDKEKAETLASSLQEDLAHTRNDANRLQDTIAKVEDEYRAFQEEAKKQIEDLNLTLEKLRSELEEKETERSDMKETIFELEDEVEQHRAVKLHDNLIISDLENTVKKLQDQKHDMEREIKTLHRRLREESAEWRQFQADLQTAVVIANDIKSEAQEEIGDLKRRLHEAQEKNEKLTKELEEIKSRKQEEERGRVYNYMNAVERDLAALRQGMGLSRRSSTSSEPTPTVKTLIKSFDSASQVPNPAAATIPRTPLSPSPMKTPPAAAVSPMQRHSISGPISTSKPLTALSDKRPNYGEIPVQEHLLRTSSTSRPASLPRVSAMESAKTISVSRRSSEEIKRDISAPEGASPASLMAMGTTSPQLSLSSSPTASVTPTTRSRIREERKDPLSALAREYGGSKRNALLKWCQKKTEGYQNIDITNFSSSWNDGLAFCALLHTYLPAHIPYQELNSQDKKRNFTLAFQAAESVGIKSTLDINEMVRTERPDWQNVMLYVTAIYKYFET