Details from NCBI annotation

Gene Symbol Smtn
Gene Name smoothelin, transcript variant X4
Entrez Gene ID 101724985

Database interlinks

Part of NW_004624747.1 (Scaffold)

For more information consult the page for NW_004624747.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SMTN ENSCPOG00000012362 (Guinea pig)

Gene Details

smoothelin

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011124, Guinea pig)

Protein Percentage 86.89%
CDS Percentage 90.02%
Ka/Ks Ratio 0.40224 (Ka = 0.0783, Ks = 0.1946)

SMTN ENSG00000183963 (Human)

Gene Details

smoothelin

External Links

Gene Match (Ensembl Protein ID: ENSP00000351593, Human)

Protein Percentage 87.01%
CDS Percentage 88.03%
Ka/Ks Ratio 0.19775 (Ka = 0.069, Ks = 0.349)

Smtn ENSMUSG00000020439 (Mouse)

Gene Details

smoothelin

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000133155, Mouse)

Protein Percentage 78.62%
CDS Percentage 81.8%
Ka/Ks Ratio 0.25815 (Ka = 0.1302, Ks = 0.5043)

Smtn ENSRNOG00000019451 (Rat)

Gene Details

smoothelin (Smtn), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000026481, Rat)

Protein Percentage 79.98%
CDS Percentage 81.58%
Ka/Ks Ratio 0.24661 (Ka = 0.1287, Ks = 0.522)

Genome Location

Sequence Coding sequence

Length: 2754 bp    Location: 7559378..7582080   Strand: +
>XM_004843468.1
ATGGCAGACGAGGCCTTAGCTGGGCTGGATGAGGGAGCCCTCCGGAAATTGCTAGAGGTCACAGCAGATCTGGCAGAGCGGCGACGCATCCGTTCAGCCATCCGGGAGCTGCAGCGGCAGGAGCTGGAACGCGAGGAGGAAGCCCTGGCATCCAAACGCTTCCGTGCTGAGCGACAGGAAAACAAGGAGAACTGGCTGCACGCTCAGCATCAGGAAGCTGAACAGCGGGCTGCCCTGACACGGCTGGCAGGGCAGCTGGAGTCCATGAATGATGTGGAGGAGCTAACCACACTGCTGCGAAGTGCTGGTAAGTATGAGGAACGAAAGCTGATCCGAGCCGCCATCCGCCGTGTACGGGCTCAGGAGATTGAGGCTGCCACCGTGGCTGGGAGATTGTGCAGTGGGCAATCCAACAGTGGCTCCAGAGAACACAGCAAGGGGCAGGCAGCTCACAGGCTTGAACAGTGTGAGGTGTCAGAACCCAAGGAAGAACAGCAGGCAGAAATTCCAGAGCCAACCCCAACCCCTGAGGGTACCGGGCAGGATGTGACCACAGTGACACTCTTGCTGAGAGCCCCACCTGGGGACACACCTGGCTCAACTGCTTCACCTGACAATTCACCCACCACTGCTTCTCCTGAACCTCCACTGGAGCCTGCCGGAGCCCAATGTGGTGCTGCTGAGACTCCAGGCAGCCCTGAGCCACCTCCCAGCACCCCCAGGACTCCCACCCCTGAGCCCCCGGAGTCACTGGCCCAACCCAACACAGAGGGGCAGGTGGTCAGCAAGCTCCTGCCTGGCCCCACAGAGCTTCCTGCTGCCCAGGCCCCCACCAGAGGCCCCTCCAACAAAAACAGAGCAAACCTGGCTGGACCCCAACCCTGTCAACGTTCTCTGTCTGTGCTCAGCCCCCGACAGCCAGCCCAGAATCAAGAGTCCACCCCCCTTGCCAGCGGACCTTCCCCATTCCAGCGGGCTGGCTCTGTGCGGGATCGTGTCCGAAAGTTTGCATCCGATTCTCCTACGGCTGCCAGGCTTCAGGATGGCCCAACCAGAGCAGCCCTGGGTTCCCTGACCCCCACAAGACTTCTAGGCCCCTCCCTCATCAGCACCACCTCTGCCTCCTCCTCCAGCAGCTCCTCCTCTCTGGGCCCCAGTGACATCTCCTCCCAGTTCAGCAAGGAGCAAAAAGGAATAGCTCGGCCCTTGGCCCAGCTTCAGAGCTGCCCCCAAGAGGAGGGCCCCAGAGGGCGGGGCTTGGCTGCCAGGTCCCTTGAAAACAGTGCAGGGGGGCCCATGGCCTGCTCAGAGGAACCCAGTGCCCCGCTGCCTGTGGCTGTCGGTACTCCTGAGCCAGGGGCCAGTATGAAGACCACATTCACCATCGAGATCAAGGATGGCCGTGGCCAGGCTTCCACAGGCCGGGTGCTACTACCCACAAGCAACCAGAGGGCAGAACTGACACTGGGGCTGCGGACAGCCCCCACCCTCCTCACCACCAGCAGTGGGAACAAGAGCACTATCGCCCATGTCAGCAGCCCTGGGACCCTCACCCGGATGGGCAGTGTCACTCACGTCACCACCTTCAGCCATGGCTCCCCTGGTAACCGAGCAGGCTGCAGCGTTAAGATGGAGCCAGAGCCAGTGGAGCCTCCCTCTGCAGCAGTGGAAGCCACTAATGGTGCAGAGCAGACCCAGGTGGACAAAGCACCACAGGGGCAGAGCCCACTGAGCACTGAGGAGTTGATGGCCATTGAGGATGAAGGAGTCCTGGACAAGATGCTGGATCAGAGTACAGACTTTGAGGAGCGGAAGCGCATCCGGGCTGCACTCCGAGAGCTCAGACAAAGGAAGAGAGACCAGAGGGACAAGGAGCGAGAACGGCGACTGCAGGAGGCACGGGCCCGGCCAGGGGAGAGACGAAGCAACACAGCCACGGAGACCACCACAAGGCACAGCCAGCGGGCAGCTGATGGCTCCACTGTCAGCACTGTTACCAAGACTGAGCGGCTCGTCCAGTCCAATGATGGTACACGGACGGCCCGCACCACCACAGTGGAGTCAAGTTTTGTGAGGCGCTCGGAGAATGGCAGTGGCAGCACTACAGTGCAAACCAAGACCTTCTCCTCTTCCTCTTCTTCATCTAAGAAAATGGGCAGCATCTTCGACCGAGAGGACCAGGCCAGCCCTCGGGCTGGCAGCCTGGCAGCACTTGAAAAACGCCAGGCAGAGAAAAAGAAAGAACTGATGAAGGCTCAGAGTCTGCCCAAGACCTCAGCATCCCAAGCACGCAAGGCCATGATTGAGAAGCTGGAGAAAGAGGGCACCTCTGGCAGCCCTGGTGGACCTCGCACAGCTGTGCAGCGTTCCACCAGCTTTGGAGTTCCCAATGCCAACAGCATCAAGCAAATGTTGTTGGACTGGTGCCGAGCCAAGACACGTGGCTATGAGCACGTGGACATCCAGAACTTCTCCTCCAGCTGGAGTGATGGGATGGCTTTCTGTGCCCTGGTACACAACTTCTTCCCTGAGGCCTTTGACTATGGGCAGCTTAGCCCACAGAACCGGCGCCAGAACTTTGAAGTGGCCTTCTCATCCGCGGAGATGTTGGTGGACTGCGTACCCCTGGTGGAGGTGGAGGACATGATGATCATGGGCAAGAAGCCCGACCCCAAGTGCGTCTTCACCTATGTACAGTCGCTCTACAACCACCTGCGGCGCCACGAGCTGCGCCTGCGCGGCAAGAATGTCTAG

Related Sequences

XP_004843525.1 Protein

Smtn PREDICTED: smoothelin isoform X4 [Heterocephalus glaber]

Length: 917 aa      View alignments
>XP_004843525.1
MADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEEALASKRFRAERQENKENWLHAQHQEAEQRAALTRLAGQLESMNDVEELTTLLRSAGKYEERKLIRAAIRRVRAQEIEAATVAGRLCSGQSNSGSREHSKGQAAHRLEQCEVSEPKEEQQAEIPEPTPTPEGTGQDVTTVTLLLRAPPGDTPGSTASPDNSPTTASPEPPLEPAGAQCGAAETPGSPEPPPSTPRTPTPEPPESLAQPNTEGQVVSKLLPGPTELPAAQAPTRGPSNKNRANLAGPQPCQRSLSVLSPRQPAQNQESTPLASGPSPFQRAGSVRDRVRKFASDSPTAARLQDGPTRAALGSLTPTRLLGPSLISTTSASSSSSSSSLGPSDISSQFSKEQKGIARPLAQLQSCPQEEGPRGRGLAARSLENSAGGPMACSEEPSAPLPVAVGTPEPGASMKTTFTIEIKDGRGQASTGRVLLPTSNQRAELTLGLRTAPTLLTTSSGNKSTIAHVSSPGTLTRMGSVTHVTTFSHGSPGNRAGCSVKMEPEPVEPPSAAVEATNGAEQTQVDKAPQGQSPLSTEELMAIEDEGVLDKMLDQSTDFEERKRIRAALRELRQRKRDQRDKERERRLQEARARPGERRSNTATETTTRHSQRAADGSTVSTVTKTERLVQSNDGTRTARTTTVESSFVRRSENGSGSTTVQTKTFSSSSSSSKKMGSIFDREDQASPRAGSLAALEKRQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGTSGSPGGPRTAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEVAFSSAEMLVDCVPLVEVEDMMIMGKKPDPKCVFTYVQSLYNHLRRHELRLRGKNV