Sequence details NCBI ID: XM_004843440.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sf3a1
Gene Name splicing factor 3a, subunit 1, 120kDa, transcript variant X1
Entrez Gene ID 101716117

Database interlinks

Part of NW_004624747.1 (Scaffold)

For more information consult the page for NW_004624747.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SF3A1 ENSCPOG00000014589 (Guinea pig)

Gene Details

splicing factor 3a, subunit 1, 120kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013144, Guinea pig)

Protein Percentage 99.5%
CDS Percentage 94.62%
Ka/Ks Ratio 0.01177 (Ka = 0.0025, Ks = 0.2085)

SF3A1 ENSG00000099995 (Human)

Gene Details

splicing factor 3a, subunit 1, 120kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000215793, Human)

Protein Percentage 98.87%
CDS Percentage 92.18%
Ka/Ks Ratio 0.01793 (Ka = 0.0061, Ks = 0.3385)

Sf3a1 ENSMUSG00000002129 (Mouse)

Gene Details

splicing factor 3a, subunit 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000002198, Mouse)

Protein Percentage 98.48%
CDS Percentage 90.9%
Ka/Ks Ratio 0.01973 (Ka = 0.008, Ks = 0.406)

Sf3a1 ENSRNOG00000005218 (Rat)

Gene Details

splicing factor 3a, subunit 1 (Sf3a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008355, Rat)

Protein Percentage 98.86%
CDS Percentage 90.43%
Ka/Ks Ratio 0.01236 (Ka = 0.0055, Ks = 0.4473)

Genome Location

Sequence Coding sequence

Length: 2382 bp    Location: 6679615..6654656   Strand: -
Raw sequence   
>XM_004843440.1
ATGCCGGCCGGACCCGTGCAGGCGGTGCCTCCGCCGCCGCCGGTGATCACCGAGCCCAAACAGCCAACTGAAGAAGAAGCATCTTCAAAGGAGGATTCTACCCCCTCCAAACCAGTGGTGGGGATTATTTACCCTCCGCCAGAGGTCAGAAACATCGTTGACAAGACTGCTAGCTTTGTGGCCAGAAATGGGCCTGAATTTGAAGCTAGGATACGACAGAATGAGATCAACAACCCTAAGTTCAACTTCCTGAACCCCAATGACCCTTACCATGCCTACTACCGCCACAAGGTCAGCGAGTTCAAGGAGGGAAAGGCTCAGGAGCCCTCAGCTGCCATCCCCAAGGTCATGCAGCAGCAGCAGCAAGCCACCCAGCAGCAGCTGCCTCAGAAGGTCCAAGCACAGGTGATCCAAGAGACCATCGTGCCCAAAGAGCCCCCACCTGAGTTTGAGTTCATCGCTGACCCTCCCTCCATCTCAGCCTTTGACCTGGATGTGGTGAAGCTGACAGCTCAGTTTGTGGCCAGGAACGGGCGTCAGTTTCTAACCCAGCTGATGCAGAAAGAGCAACGCAACTACCAGTTTGACTTTCTCCGCCCACAACACAGCCTCTTCAACTATTTTACGAAACTAGTGGAGCAGTATACTAAGATCTTGATTCCACCCAAAGGTTTATTTGCAAAGCTCAAGAAAGAAGCTGAAAACCCTCGAGAAGTTTTGGATCAGGTGTGTTACCGAGTGGAGTGGGCCAAGTTCCAGGAGCGTGAGAGGAAGAAAGAGGAGGAGGAAAAGGAGAAGGAGCGGGTGGCCTATGCTCAGATTGACTGGCATGATTTTGTGGTGGTGGAGACAGTGGACTTCCAACCTAATGAGCAAGGGAACTTTCCTCCCCCCACCACGCCAGAGGAGCTGGGTGCCCGAATCCTCATTCAGGAGCGCTATGAGAAGTTTGGGGAGAGTGAGGAGGTTGAGATGGAGGTCGAGTCTGATGAGGAGGATGAGAAACAGGAGAAGTCAGAGGAAGCTCCTTCCCAGCTGGACCAGGATACCCAAGTCCAGGACATGGATGAGGGTTCAGATGATGAAGAGGAAGGGCAGAAAGTGCCCCCACCCCCAGAGACACCCATGCCTCCACCTCTGCCCCCAACTCCAGACCAAGTCATTGTCCGCAAGGACTATGATCCTAAAGCTTCCAAGCCCCTGCCTCCGGCTCCTGCTCCAGATGAATATCTCGTGTCTCCCATTACGGGGGAGAAGATTCCTGCCAGCAAAATGCAGGAACACATGCGAATTGGGCTTCTGGACCCCCGCTGGCTGGAGCAGCGGGATCGCTCCATCCGAGAGAAACAGAGTGATGATGAGGTTTACGCACCAGGTCTGGATATTGAGAGCAGTTTGAAGCAGTTGGCTGAGCGGCGTACTGACATCTTTGGTGTGGAAGAAACAGCCATCGGTAAGAAGATCGGTGAGGAGGAGATCCAGAAGCCAGAGGAAAAGGTCACCTGGGATGGTCATTCAGGCAGCATGGCCCGAACCCAGCAGGCTGCCCAAGCCAACATCACCCTCCAAGAGCAGATTGAGGCCATCCACAAGGCCAAGGGCTTGGTGCCAGAAGATGATACTAAAGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCCCCCAGCAGCCACCACCCCCATCTTCAGCCACGAACATCCCCAGTTCGGCCCCACCCATCACGTCGGTGCCCCGGCCACCTGCAATGCCGCCTCCTGTCCGTACTACAGTTGTGTCTGCAGTGCCTGTCATGCCTCGCCCGCCAATGGCATCTGTGGTCCGGTTGCCCCCGGGTTCAGTGATCGCTCCCATGCCACCCATCATCCATGCACCCAGGATCAATGTGGTGCCCATGCCTCCCTCTGCACCTCCAATCATGGCACCCCGTCCACCCCCCATGATTGTACCAACAGCTTTTGTGCCTGCCCCACCTGTGGCTCCTGTCCCAGCTCCGGCTCCAATGCCCCCTGTGCACCCTCCACCTCCCATGGAGGATGAGCCTGCTTCCAAGAAACTGAAGACAGAGGACAGCCTCATGCCTGAGGAGGAGTTCCTGCGCAGGAACAAGGGTCCGGTATCTATCAAAGTACAGGTGCCCAACATGCAGGACAAGACGGAATGGAAGCTGAATGGGCAGGTGCTGGTCTTCACCCTCCCGCTCACAGACCAGGTCTCTGTCATCAAGGTAAAGATTCATGAAGCCACAGGCATGCCTGCAGGGAAACAGAAACTACAGTATGAGGGCATCTTCATCAAGGATTCCAACTCTCTGGCTTACTACAACATGGCCAATGGTGCTGTCATCCACCTGGCCCTCAAGGAGAGAGGTGGCAGAAAGAAGTAG

Related Sequences

XP_004843497.1 Protein

Sf3a1 PREDICTED: splicing factor 3A subunit 1 isoform X1 [Heterocephalus glaber]

Length: 793 aa      View alignments
>XP_004843497.1
MPAGPVQAVPPPPPVITEPKQPTEEEASSKEDSTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQATQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFAKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDEKQEKSEEAPSQLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPAMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPASKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK