Sequence details NCBI ID: XM_004843403.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ap1b1
Gene Name adaptor-related protein complex 1, beta 1 subunit, transcript variant X6
Entrez Gene ID 101702149

Database interlinks

Part of NW_004624747.1 (Scaffold)

For more information consult the page for NW_004624747.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

AP1B1 ENSCPOG00000005293 (Guinea pig)

Gene Details

adaptor-related protein complex 1, beta 1 subunit

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004761, Guinea pig)

Protein Percentage 98.29%
CDS Percentage 94.67%
Ka/Ks Ratio 0.03988 (Ka = 0.0082, Ks = 0.205)

AP1B1 ENSG00000100280 (Human)

Gene Details

adaptor-related protein complex 1, beta 1 subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000350199, Human)

Protein Percentage 97.55%
CDS Percentage 92.0%
Ka/Ks Ratio 0.02934 (Ka = 0.0125, Ks = 0.4271)

Ap1b1 ENSMUSG00000009090 (Mouse)

Gene Details

adaptor protein complex AP-1, beta 1 subunit

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000009234, Mouse)

Protein Percentage 97.01%
CDS Percentage 90.3%
Ka/Ks Ratio 0.02928 (Ka = 0.0141, Ks = 0.4815)

Ap1b1 ENSRNOG00000008786 (Rat)

Gene Details

adaptor-related protein complex 1, beta 1 subunit (Ap1b1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000054218, Rat)

Protein Percentage 97.44%
CDS Percentage 90.19%
Ka/Ks Ratio 0.02291 (Ka = 0.0119, Ks = 0.5196)

Genome Location

Sequence Coding sequence

Length: 2817 bp    Location: 5755321..5703647   Strand: -
Raw sequence   
>XM_004843403.1
ATGACTGACTCAAAATATTTCACCACAACCAAGAAAGGGGAGATCTTCGAGCTGAAGGCAGAGCTCAACAGTGACAAGAAGGAAAAGAAGAAGGAGGCAGTAAAGAAAGTGATTGCGTCGATGACCGTGGGCAAAGATGTCAGTGCCCTCTTCCCTGATGTGGTGAACTGCATGCAGACAGACAACCTGGAGCTAAAGAAGCTGGTATACCTGTACTTGATGAACTATGCCAAGAGTCAGCCTGACATGGCCATTATGGCCGTCAACACCTTTGTGAAGGACTGTGAGGACCCCAACCCCCTCATCCGGGCCTTAGCAGTGCGGACCATGGGCTGCATCCGAGTTGACAAGATCACAGAGTACCTATGTGAGCCACTCCGGAAGTGCCTGAAGGACGAGGACCCATATGTGCGCAAGACTGCAGCTGTGTGTGTAGCCAAACTCCATGACATCAATGCCCAGCTGGTGGAGGATCAGGGCTTCCTGGACACCCTTAAAGACCTTATCTCCGACTCCAACCCCATGGTAGTAGCAAACGCAGTGGCTGCCCTCTCAGAGATCGCTGAGTCTCACCCCAGCAGCAACCTGCTTGACCTGAATCCACAGTCCATCAACAAGCTGCTAACAGCCCTGAACGAGTGCACTGAGTGGGGCCAGATCTTCATCCTGGACTGCCTGGCTAACTACATGCCCAAGGACGACCGTGAGGCCCAAAGCATCTGTGAGCGGGTCACACCCAGGCTTTCCCATGCCAACTCTGCTGTGGTGCTATCTGCTGTGAAGGTACTGATGAAGTTCATGGAGATGTTGTCCAAGGACCTGGACTACTATGGCACACTGCTGAAGAAGCTGGCTCCACCCCTTGTCACACTGCTGTCAGCTGAGCCAGAGCTGCAGTATGTGGCCCTGCGTAACATTAATCTCATCGTGCAGAAAAGGCCTGAGATCCTGAAGCATGAGATGAAGGTGTTCTTTGTGAAATACAATGATCCCATCTATGTGAAGCTGGAGAAGCTAGACATCATGATCCGCCTGGCTTCCCAGGCCAACATTGCCCAGGTGTTGGCAGAGCTGAAAGAGTATGCAACAGAAGTGGATGTGGATTTTGTAAGGAAAGCTGTGCGTGCCATTGGCCGCTGTGCCATCAAGGTGGAGCAATCTGCAGAACGCTGTGTGAGCACACTGCTCGATCTCATCCAGACCAAGGTCAACTATGTGGTCCAGGAAGCCATCGTGGTCATTAAGGACATCTTCCGCAAGTACCCCAACAAGTATGAGAGCGTGATTGCCACGCTGTGTGAGAACCTTGACTCCCTGGATGAGCCTGAGGCCCGGGCTGCCATGATCTGGATTGTGGGCGAGTATGCTGAACGGATTGACAATGCAGATGAGCTGCTAGAGAGCTTCCTTGAGGGCTTCCATGATGAAAGCACCCAGGTACAGCTGCAGCTGCTTACAGCCATTGTGAAGCTCTTTCTGAAGAAGCCAACGGAGACTCAGGAACTGGTGCAGCAGGTCCTCAGTTTGGCCACTCAGGACTCAGATAATCCAGACCTGCGGGATCGTGGCTACATCTACTGGCGCCTGCTCTCCACGGACCCCGTGGCTGCCAAGGAGGTAGTGCTGGCCGAGAAGCCACTCATCTCCGAAGAGACAGACCTCATCGAGCCTACGCTTCTGGATGAGCTCATCTGCTACATCGGCACTCTGGCCTCTGTCTATCATAAGCCACCCAGTGCCTTTGTGGAGGGGGGCCGGGGCGTGGTGCACAAGAGCCTGCCGCCCCGTACTGCCTCGAACGAGAGCACAGAAAGCCCTGAGGCAGCCCCTGCTGGAGCCCCCACTGGTGAACAACCAGATGTCATCCCCACCCAGGGCGACCTGTTGGGAGACCTCCTCAACCTGGACCTTGGGCCCCCAGTGAGCGGCCCACCCCTAGCCACCTCCTCAGTGCAAATGGGAGCTGTGGACCTTCTTGGAGGTGGCCTTGATAGCCTGATTGGGGACACCAACTTCGGGGCACCCCCAGCAGCAGCACCTGCCAGACCAGGAGCACCCATTGGCAGTGGCCTGAGTGACCTCTTTGACCTGACTAGTGGTGTGGGCACCCTGTCAGGATCCTATGTGGCCCCCAAAGCAGTCTGGCTCCCAGCCATGAAGGCCAAGGGACTAGAGATCTCAGGCACCTTCACGCGCCAGGTGGGCTCCATCTCCATGGACCTGCAGTTAACCAACAAGGCCCTGCAGGTCATGATGGACTTTGCCATCCAGTTCAACCGCAACAGCTTTGGCCTGGCCCCCGCCGCCCCCCTCCAGGTGCATGCACCACTCAGCCCCAACCAGACTGTGGAGATCTCCCTGCCTCTTAACACAGTGGGCTCAGTCATGAAGATGGATCCTCTCAACAACCTCCAGGTGGCTGTGAAGAACAACATTGACATCTTCTACTTCAGCACCTTGTATCCACTGCATATCCTCTTTGTGGAGGACGGGAAGATGGACCGGCAGATGTTCCTCGCCACATGGAAAGACATTCCTAATGAGAATGAAGCCCAGTTCCAGATCAGAGACTGTCCCCTTAATGCGGAGGCTGTGAGCAGCAGGCTGCAGAGTAGCAACATCTTTACCATTGCCAAGAGGAACGTGGAGGGCCAGGACATGCTCTACCAGTCCCTGAAACTGACCAATGGCATCTGGGTGCTGGCAGAGCTGCGGATCCAGCCAGGCAATACCAGCTTCACGCTGTCCCTGAAGTGTCGCGCACCAGAGGTGTCCCCACATGTGTACCAGGCCTATGAGACCATCCTCAAGAACTGA

Related Sequences

XP_004843460.1 Protein

Ap1b1 PREDICTED: AP-1 complex subunit beta-1 isoform X6 [Heterocephalus glaber]

Length: 938 aa      View alignments
>XP_004843460.1
MTDSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQLVEDQGFLDTLKDLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSINKLLTALNECTEWGQIFILDCLANYMPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYGTLLKKLAPPLVTLLSAEPELQYVALRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIKDIFRKYPNKYESVIATLCENLDSLDEPEARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLQLLTAIVKLFLKKPTETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVAAKEVVLAEKPLISEETDLIEPTLLDELICYIGTLASVYHKPPSAFVEGGRGVVHKSLPPRTASNESTESPEAAPAGAPTGEQPDVIPTQGDLLGDLLNLDLGPPVSGPPLATSSVQMGAVDLLGGGLDSLIGDTNFGAPPAAAPARPGAPIGSGLSDLFDLTSGVGTLSGSYVAPKAVWLPAMKAKGLEISGTFTRQVGSISMDLQLTNKALQVMMDFAIQFNRNSFGLAPAAPLQVHAPLSPNQTVEISLPLNTVGSVMKMDPLNNLQVAVKNNIDIFYFSTLYPLHILFVEDGKMDRQMFLATWKDIPNENEAQFQIRDCPLNAEAVSSRLQSSNIFTIAKRNVEGQDMLYQSLKLTNGIWVLAELRIQPGNTSFTLSLKCRAPEVSPHVYQAYETILKN