Sequence details NCBI ID: XM_004843273.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Arvcf
Gene Name armadillo repeat gene deleted in velocardiofacial syndrome, transcript variant X6
Entrez Gene ID 101720743

Database interlinks

Part of NW_004624747.1 (Scaffold)

For more information consult the page for NW_004624747.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ARVCF ENSCPOG00000014606 (Guinea pig)

Gene Details

armadillo repeat gene deleted in velocardiofacial syndrome

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013160, Guinea pig)

Protein Percentage 95.11%
CDS Percentage 92.38%
Ka/Ks Ratio 0.10032 (Ka = 0.0246, Ks = 0.2454)

ARVCF ENSG00000099889 (Human)

Gene Details

armadillo repeat gene deleted in velocardiofacial syndrome

External Links

Gene Match (Ensembl Protein ID: ENSP00000263207, Human)

Protein Percentage 93.14%
CDS Percentage 87.77%
Ka/Ks Ratio 0.06162 (Ka = 0.0359, Ks = 0.5832)

Arvcf ENSMUSG00000000325 (Mouse)

Gene Details

armadillo repeat gene deleted in velo-cardio-facial syndrome

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000111276, Mouse)

Protein Percentage 92.08%
CDS Percentage 86.32%
Ka/Ks Ratio 0.07242 (Ka = 0.0433, Ks = 0.5984)

Arvcf ENSRNOG00000001888 (Rat)

Gene Details

armadillo repeat gene deleted in velo-cardio-facial syndrome (Arvcf), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000047113, Rat)

Protein Percentage 89.42%
CDS Percentage 83.56%
Ka/Ks Ratio 0.09593 (Ka = 0.068, Ks = 0.7091)

Genome Location

Sequence Coding sequence

Length: 2889 bp    Location: 643807..590293   Strand: -
Raw sequence   
>XM_004843273.1
ATGGAGGACTGCAACGTGCACTCGGCAGCCAGCATCCTGGCCTCAGTGAAGGAGCAGGAAGCCCGCTTCGAGCGGCTGACTCGGGCGCTGGAGCAGGAACGGTGCCACGTTGCCCTGCAGCTGGAGAATGCCCAGCAACCTGGCATGGGCAGTGGTGGTATGGGCAGTGGGCAGTCTCTGCCAATGGCCTGGCAACAACTAGTTTTGCAGGAACAGAGCCCGGGCAGCCAGGCATCGCTGGTCACGATGCCTGAGGCGCCCGAGGTGCTCGAGGAGACTGTGACAGTGGAAGAGGACCCTGGCACGCCCACCTCCCATGTGTCCATCGTCACATCTGAAGATGGAACAACCCGGCGTACCGAGACCAAGGTCACCAAGACAGTCAAGACAGTGACCACGAGGACAGTACGCCAGGTGCCTTTGGGCCCAGATGGACTCCCCCTGCTGGATGGCGGCCCCCCACTTGGCCCTTTTGCCGATGGCCCCCTGGACCGGCATTTCCTGCTTCGCGGTGGTGGCCCAGCAGCCACACTTTCCCGAGCCTACCTCAGCAGCGGAGGTGGCTTTCCCAATGGCCCTGAGCCTCGTGATGGCCCTAACTATGGCAGCCTGTCCCGAGGGCTTGGAGTGCGACCCCCACGCACTGGTCCTCTTGGCCCTGGACCTGGCGATGGGTGCTTTACACTGCCTGGCCGCCGGGAGGCCTTCCCTGTGGGTCCTGAGCCTGGGCCACAGAGTGGCCGCTCTCTGCCTGAGCATTTCCAGGCAGAGCCCTATGGTTTAGAGGATGACACACGCAGCCTGGCTGCCGATGATGAGGGTGGCCCTGAGCTGGAGCCGGACTATGGCACAGCCACACGGAGGAGACCTGATTGTGGGCGGGGCCTCCGGGCCAGGACCTACGAGGACACAGCAGATGATGCTGGTGAGCTGATTGACGAGAGGCCCCCATTCCTGGCAGCAACAGCACCACTAGCTCAGCCTGAGCGGGGCAGCCTGGGCAGCCTGGACCGGGCGGTGAGGCACTCGCCTTCAGTGGACAGCACCCGCAAGGAGCCGCGCTGGCGGGACCCTGAGCTTCCCGAGGTGCTGGCCATGCTGCGGCACCCTGTGGACCCTGTGAAGGCCAATGCAGCTGCCTACCTGCAGCATCTGTGCTTTGAGAATGAGGGTGTGAAGCGGCGTGTGCGGCAGCTGCGTGGCCTGCCACTCCTTGTAGCACTGCTGGACCACCCTCGGGCAGAGGTGCGGCGCCGGGCCTGTGGGGCACTGCGCAACCTCTCCTATGGCCGTGACACCGACAACAAGGCTGCCATCCGTGACTGCGGTGGTGTGCCTGCCCTGGTGCGCCTGCTGCGTGCTGCCCGTGACAACGAGGTCCGTGAGCTAGTCACCGGCACGCTGTGGAACCTGTCATCCTATGAGCCCCTGAAGATGGTCATCATTGACCACGGCTTGCAGACACTGACACATGAGGTCATCGTGCCCCATTCGGGCTGGGAGCGGGAACCGAATGAGGACTCCAAGCCTCGGGATGCCGAGTGGACGACTGTTTTCAAGAACACATCAGGCTGCTTGAGGAATGTGAGCTCTGATGGTGCTGAGGCCCGGCGACGACTCCGAGAGTGCGAGGGTCTGGTGGATGCCCTCCTGCATGCTCTGCAGTCAGCTGTGAGCAGGAAGGACACAGACAACAAGTCAGTGGAAAACTGCGTGTGCATCATGCGGAACCTGTCCTACCATGTGCACAAGGAGGTGCCTGGTGCCGACAGGTACCAGGAGGCTGAGCCCAGGCCCACAGGCATTACTGCAGGCTCCCAGCGACGGAAGAGGGATGACGCCAGCTGCTTTGGTGGCAAGAAGGCCAAAGAGGAGTGGTTCCATCAAGGGAAGAAGGATAGTGAGATGGACCGGAACTTTGACACGCTGGACCTGCCCAAGAGAACTGAGGCTGCTAAAGGCTTTGAGCTGCTGTATCAGCCCGAGGTGGTACGTCTCTACCTCTCCCTCCTTACGGAGAGCCGGAACTTCAACACTCTGGAGGCTGCTGCTGGTGCTTTACAAAACCTCAGTGCTGGGAACTGGATGTGGGCTACATACATCCGTGCCACAGTGCGCAAGGAGCGTGGGCTGCCGGTGCTGGTGGAACTGCTGCAGTCTGAGACGGACAAGGTGGTGCGTGCTGTTGCCATTGCATTGCGCAACCTCTCGCTGGACCGGCGCAACAAGGACCTCATAGGGAGCTATGCCATGGCTGAGCTGGTGCGGAACGTGCGAAATGTGCAAGTTCCTACACGTCCTGAGGCCCGTCTGGAGGAGGACACAGTGGTGGCCGTGCTAAACACCATCCATGAGATCGTGTCTGATAGCCTGGACAATGTGCGCTCACTCCTGCAGGCCCATGGTGTGCCAGCGCTTGTGGCACTGGTGGCAGCCAGCCAGTCAGTTCGTGAGGCAAAGGCAGCCTCACATGTGCTGCAGACCGTGTGGAGCTACAAGGAGCTGCGCAGCACCCTACAGAGGGATGGCTGGACCAAGGCACGCTTCCAGTCAGCTGCTACCGCCGCCAAGAGCCCCAAGGGAGCACAGAGTCCTGGGGGTTTCGATGACAGCACACTGCCGCTGGTAGACAAGAGCCTTGATGGTGAGAAGGCAGGCAGCCGGGATGTGATCCCCATGGATACACTTGGTCCAGACGGATACTCTACTGTGGACCGGAGGGAGCGGAGGGCCCTGGGCAGCAACTCTGCAGGGGAGGGCTCTGAGAAGGAACCATTAAAACCCGACCCCAGCAGGAAGGCCCCTCCTTCTGGGCCCAGCAGGCCTGCGGTCAGGCTGGTGAACGCCGTGGGGGACTCTAAGCCTCAGCCTGTTGACTCCTGGGTCTAG

Related Sequences

XP_004843330.1 Protein

Arvcf PREDICTED: armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X6 [Heterocephalus glaber]

Length: 962 aa      View alignments
>XP_004843330.1
MEDCNVHSAASILASVKEQEARFERLTRALEQERCHVALQLENAQQPGMGSGGMGSGQSLPMAWQQLVLQEQSPGSQASLVTMPEAPEVLEETVTVEEDPGTPTSHVSIVTSEDGTTRRTETKVTKTVKTVTTRTVRQVPLGPDGLPLLDGGPPLGPFADGPLDRHFLLRGGGPAATLSRAYLSSGGGFPNGPEPRDGPNYGSLSRGLGVRPPRTGPLGPGPGDGCFTLPGRREAFPVGPEPGPQSGRSLPEHFQAEPYGLEDDTRSLAADDEGGPELEPDYGTATRRRPDCGRGLRARTYEDTADDAGELIDERPPFLAATAPLAQPERGSLGSLDRAVRHSPSVDSTRKEPRWRDPELPEVLAMLRHPVDPVKANAAAYLQHLCFENEGVKRRVRQLRGLPLLVALLDHPRAEVRRRACGALRNLSYGRDTDNKAAIRDCGGVPALVRLLRAARDNEVRELVTGTLWNLSSYEPLKMVIIDHGLQTLTHEVIVPHSGWEREPNEDSKPRDAEWTTVFKNTSGCLRNVSSDGAEARRRLRECEGLVDALLHALQSAVSRKDTDNKSVENCVCIMRNLSYHVHKEVPGADRYQEAEPRPTGITAGSQRRKRDDASCFGGKKAKEEWFHQGKKDSEMDRNFDTLDLPKRTEAAKGFELLYQPEVVRLYLSLLTESRNFNTLEAAAGALQNLSAGNWMWATYIRATVRKERGLPVLVELLQSETDKVVRAVAIALRNLSLDRRNKDLIGSYAMAELVRNVRNVQVPTRPEARLEEDTVVAVLNTIHEIVSDSLDNVRSLLQAHGVPALVALVAASQSVREAKAASHVLQTVWSYKELRSTLQRDGWTKARFQSAATAAKSPKGAQSPGGFDDSTLPLVDKSLDGEKAGSRDVIPMDTLGPDGYSTVDRRERRALGSNSAGEGSEKEPLKPDPSRKAPPSGPSRPAVRLVNAVGDSKPQPVDSWV