Sequence details NCBI ID: XM_004842536.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col6a2
Gene Name collagen, type VI, alpha 2, transcript variant X2
Entrez Gene ID 101711621

Database interlinks

Part of NW_004624745.1 (Scaffold)

For more information consult the page for NW_004624745.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL6A2 ENSCPOG00000021819 (Guinea pig)

Gene Details

collagen, type VI, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019033, Guinea pig)

Protein Percentage 95.2%
CDS Percentage 91.11%
Ka/Ks Ratio 0.05223 (Ka = 0.0232, Ks = 0.4444)

COL6A2 ENSG00000142173 (Human)

Gene Details

collagen, type VI, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000300527, Human)

Protein Percentage 90.08%
CDS Percentage 87.92%
Ka/Ks Ratio 0.07612 (Ka = 0.0497, Ks = 0.6523)

Col6a2 ENSMUSG00000020241 (Mouse)

Gene Details

collagen, type VI, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000001181, Mouse)

Protein Percentage 91.86%
CDS Percentage 85.36%
Ka/Ks Ratio 0.05452 (Ka = 0.0451, Ks = 0.8264)

Col6a2 ENSRNOG00000001254 (Rat)

Gene Details

collagen, type VI, alpha 2 (Col6a2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000001695, Rat)

Protein Percentage 91.47%
CDS Percentage 84.97%
Ka/Ks Ratio 0.05509 (Ka = 0.0475, Ks = 0.8624)

Genome Location

Sequence Coding sequence

Length: 3063 bp    Location: 31246488..31272397   Strand: +
Raw sequence   
>XM_004842536.1
ATGCTGCGGGGCCCCTTCATGGCACTGCTGCTCGGGGGGCTCCTGGGGACTCTCCATGCCCAGCAGCAAGAGCTCATCTCACCTGACACTGTCACCTCTGAGAGGACAAACGGCTGCCCAGAGAAAACCGACTGCCCTGTCCACGTGTACTTCGTACTGGACACCTCTGAGAGTGTGGCCATGCAGTCGCCCACCGACAGCCTGCTCTACCACATGCAGCAGTTTGTGCCGCAGCTCATCAGCCAGCTGCAGAACGAGCTCTACCTGGACCAGGTGGCGCTCAGCTGGCGCTACGGCGGCCTGCACTTCTCCGACCAAGTGGAGGTCTTCAGCCCGCCAGGCAGTGACCGTGCCTCCTTCACCAAGAGCCTGCAGGGCATCAGCTCCTTCCGCCGAGGCACCTTTACCGACTGCGCGCTGGCCAACATGACACAGGAGATCCGCCGCTCGGGGCCCCGCGGCGTCAGCTTCGCCGTGGTCATCACTGACGGCCACGTCACGGGCAGCCCGTGCGGCGGCATTAAGCTGCAGGCCGAGCGGGCCCGTGACGAGGGCATCCGGCTCTTCGCTGTGGCGCCCAATCAGAACCTGAACGAGCAGGGCCTGCGGGACCTCGCCAGCACCCCCCACGAGCTCTACCGCAGCAACTACGCCACCATGCGGCCGGACTCTACTGAGATCGACCAGGACACCATCAACCGCATCATCAAGGTCATGAAGCACGAAGCCTACGGAGAGTGCTACAAGGTGAGCTGCCTGGAGATCCCTGGGCCACCCGGCCCCAAGGGCTACCGAGGACAGAAGGGTGCCAAGGGCAACATGGGTGAGCCAGGAGAGCCCGGCCAGAAGGGGCGACAGGGGGACCCCGGCATCGAAGGCCCCATCGGATTCCCAGGACCCAAGGGTGTGCCTGGCTTCAAAGGAGAGAAGGGAGAGTTTGGAGCCGACGGAAGGAAGGGGGCCCCCGGGCTGGCAGGCAAGAACGGCACCGATGGGCAGAAGGGCAAGCTGGGCCGAATTGGACCCCCGGGCTGCAAGGGAGACACCGGAGACCGGGGCCCTGACGGGTACACAGGGGACGCCGGCAGCCCAGGAGAGCAAGGAGACCAGGGCGCCAAGGGGGATGCTGGCCGCTCAGGACGCAGGGGCCCCCCCGGAGACCCCGGAGACAAAGGAAGCAAGGGTTACCAAGGCAACAATGGAGCCCCTGGAAGTCCGGGTGTGAAAGGAGCCAAGGGCGGACCTGGGCCCCGCGGACCCAAAGGCGAGCCTGGGCGCAGAGGAGACCCTGGAGCCAAGGGCAGCCCAGGCAGTGACGGCCCCAAGGGGGAGAAGGGGGATCCTGGCCCTGAGGGGCCCCGCGGCCTGACTGGAGAGGTTGGCGGCAAAGGAGCCAAGGGGGACCGAGGGCTGCCTGGACCCAGAGGCCCCCAGGGGGCTCTCGGGCAGCCGGGGAAGCAGGGATCTCGGGGAGACCCCGGTGATGCCGGGCCCCGAGGAGACTCAGGACAGCCAGGCCCTAAGGGAGACCCCGGCAGGCCTGGATTCAGCTACCCAGGACCCCGGGGGACACCGGGAGAGAGAGGAGAGCCTGGCCCGCCTGGCCCAGAGGGAGGTCGAGGAGACTTCGGCATGAAAGGAAGACCTGGGAGGAAAGGCGAAAAGGGGGAGCCCGCTGATCCTGGTCCCCATGGAGAACCGGGCCCTCGGGGGCCCAGAGGAGACCCGGGACCCGAGGGCGAGCCTGGCCCCCCTGGAGACCCTGGCCTCACGGAGTGCGACGTCATGACCTACGTGAGGGAGACCTGTGGGTGCTGTGACTGCGAGAAGCGCTGTGGCGCCCTGGACGTGGTCTTCGTCATCGACAGCTCCGAGAGCATCGGCTACACCAACTTCACCCTGGAGAAGAACTTCGTCATCAACGTGGTCAACAGGCTGGGGGCCATCGCCAAGGACCCCAAGTCGGAGACAGGGACGCGTGTGGGCGTGGTGCAGTACAGCCACGAGGGCACTTTCGAGGCCATCCAGCTGGACGACGAGCGCATCGACTCCCTGTCCAGCTTCAAGGAGGCCGTCAAGAACCTGGAGTGGATCGCGGGTGGCACCTGGACACCCTCTGCCCTCAAGTTCGCCTACAATCAGCTCATCAAGGAGAGCCGGCGCCAGAAGACGCGCGTGTTCGCCGTGGTCATCACGGATGGGCGCCATGACCCACGTGACGACGACCTCAACCTGCGGGCGCTGTGTGACCGTGATGTCACGGTGACGGCCATCGGGATCGGCGACATGTTCCACGAGAGGCACGAGAGCGAGAACCTCTACTCCATTGCCTGTGACAAGCCACAGCAGGTGCGCAACATGACACTCTTCTCTGACCTGGTGGCTGAGAAGTTCATCGATGACATGGAGGATGTGCTGTGCCCAGACCCGCAGATTGTGTGTCCAGAGCTTCCCTGCCAAACAGAGCTGTACGTGGCGCAGTGCACACAGCGGCCCGTGGACATTGTCTTCCTGCTGGATGGCTCCGAGCGGCTGGGCGAGCAGAACTTCCACAAGGTGCGGCGCTTCGTGGAGGAGGTGGCGCAGCGCCTGACTCTGGCGCGCAGGGACGACGACCCGCTCAACGCCCGGCTGGCGCTGCTGCAGTTCGGGGGCCCGCAGGAGCAGCAGCTGGCCTTCCCACTGACCGCCAACCTGACCGTCATCCGGGAGGCGCTGGAGGACGCCCGCTACCTCAACTCCTTCTCGCACGTGGGCACGGGCGTCGTGCACGCCATCAACCACGTGGTGCGCGGTGCCCGGGCCGGGGCGCGGCGGCACGCCGAGCTGTCCTTTGTGTTCCTCACCGACGGTGTCACTGGCAACGAGAGCCTGCAGGAGGCTGTGCACTCCATGCGCAAGCAGAACGTGGTGCCCACCGTGGTGGCTGTGGGCGGCGACGTGGACGAGCACGTGCTCGCCGAGATCAGCCTGGGGGACAGGGCCGCCATCTTCCGCGAGAAGGACTTCGACAGCCTAGCGCAGCCCAGGTTCTTCGACAGGTTCATCCGCTGGATCTGTTAG

Related Sequences

XP_004842593.1 Protein

Col6a2 PREDICTED: collagen alpha-2(VI) chain isoform X2 [Heterocephalus glaber]

Length: 1020 aa      View alignments
>XP_004842593.1
MLRGPFMALLLGGLLGTLHAQQQELISPDTVTSERTNGCPEKTDCPVHVYFVLDTSESVAMQSPTDSLLYHMQQFVPQLISQLQNELYLDQVALSWRYGGLHFSDQVEVFSPPGSDRASFTKSLQGISSFRRGTFTDCALANMTQEIRRSGPRGVSFAVVITDGHVTGSPCGGIKLQAERARDEGIRLFAVAPNQNLNEQGLRDLASTPHELYRSNYATMRPDSTEIDQDTINRIIKVMKHEAYGECYKVSCLEIPGPPGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKGVPGFKGEKGEFGADGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDTGDRGPDGYTGDAGSPGEQGDQGAKGDAGRSGRRGPPGDPGDKGSKGYQGNNGAPGSPGVKGAKGGPGPRGPKGEPGRRGDPGAKGSPGSDGPKGEKGDPGPEGPRGLTGEVGGKGAKGDRGLPGPRGPQGALGQPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGTPGERGEPGPPGPEGGRGDFGMKGRPGRKGEKGEPADPGPHGEPGPRGPRGDPGPEGEPGPPGDPGLTECDVMTYVRETCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDPKSETGTRVGVVQYSHEGTFEAIQLDDERIDSLSSFKEAVKNLEWIAGGTWTPSALKFAYNQLIKESRRQKTRVFAVVITDGRHDPRDDDLNLRALCDRDVTVTAIGIGDMFHERHESENLYSIACDKPQQVRNMTLFSDLVAEKFIDDMEDVLCPDPQIVCPELPCQTELYVAQCTQRPVDIVFLLDGSERLGEQNFHKVRRFVEEVAQRLTLARRDDDPLNARLALLQFGGPQEQQLAFPLTANLTVIREALEDARYLNSFSHVGTGVVHAINHVVRGARAGARRHAELSFVFLTDGVTGNESLQEAVHSMRKQNVVPTVVAVGGDVDEHVLAEISLGDRAAIFREKDFDSLAQPRFFDRFIRWIC