Sequence details NCBI ID: XM_004842517.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101705854

Database interlinks

Part of NW_004624745.1 (Scaffold)

For more information consult the page for NW_004624745.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL18A1 ENSCPOG00000020725 (Guinea pig)

Gene Details

collagen, type XVIII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000015676, Guinea pig)

Protein Percentage 79.56%
CDS Percentage 81.57%
Ka/Ks Ratio 0.24209 (Ka = 0.1298, Ks = 0.536)

COL18A1 ENSG00000182871 (Human)

Gene Details

collagen, type XVIII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000347665, Human)

Protein Percentage 76.09%
CDS Percentage 78.53%
Ka/Ks Ratio 0.19891 (Ka = 0.1523, Ks = 0.7655)

Col18a1 ENSMUSG00000001435 (Mouse)

Gene Details

collagen, type XVIII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000101049, Mouse)

Protein Percentage 74.61%
CDS Percentage 74.53%
Ka/Ks Ratio 0.18436 (Ka = 0.1838, Ks = 0.997)

Col18a1 ENSRNOG00000001229 (Rat)

Gene Details

collagen, type XVIII, alpha 1 (Col18a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000047962, Rat)

Protein Percentage 76.84%
CDS Percentage 75.88%
Ka/Ks Ratio 0.18117 (Ka = 0.1647, Ks = 0.9091)

Genome Location

Sequence Coding sequence

Length: 5157 bp    Location: 30754637..30792352   Strand: +
Raw sequence   
>XM_004842517.1
ATGGCTCCCGACCCCAGCAGAGGCCTCCGCCTACTGCTGCTGGTCGCCTGCTGCCTGGCGCCCGCCCAGGCCACCCTGCTCCCCCTGGACTGGCTGTGGTCTTCGAAGATCAGCGGCTCCACAGCCAGCCCGGTCTCCCAGCCCCAGGGCCGCCCGTCCCCGGAGCCCACAGCGGCCCCCTCCACGCATGTGGCCCCCCAGCATGGCCCCCTGGAGCCAAGGACCGTCCCTGCCAGCACCCGGCCGGCCTCAGAGGGACAGGCGGCCGCCTGGAGCGAGGCCCCTGCTGCCCAGGCTGCCTCCACCGCGAGCCTGGACCCCAAGGAGGAGAACGTCGGGGGCGTGGGCGCCAGGATCCTGAACGTGGCCCAGGGCATTCGGAGCTTCGTCCAGCTGTGGGACGATGCTGCCCCAACCGGGACCTCCGCTGCCGTGGGGACGCCTGGCCCCGCGCCCCCCGTGGACCCGAGCGCCCTCGCTGGCCCCTCTGGCGACCCCCAGGACAGCAGCGCTGCTTCGTGGCCTAGTCCTGGAGCCCCAAGCCTTCTGGGCCCTCGGACAGCCAAGGCCGGTGCCCTGGCTGTGCCCGCCTGGCCACCTCTGTCCCCAGCACCGCTGAGGGGACCCCCCGTGCCACCTGCGTCCCCAGGTAGAGCTTCTCTGTCTCCCTTGCCAGGCGGGGCCCCTCCCTGGGGCAGCCCGCGGCCCCCGGACCTGGACACGGAGGCTGGTGCTCAGCAGCGCGGACGCCCTGACTCCCGCCGGGTGCTTTCTCTGGTGATGGCTGCTCCCTCTGCCCTGCCCGCCGGCCCCTCCGCCTGGCGCTTTCTGGTGGCTGCGGAACCTTCCCCTGGGGACGGCAGTGCTTGGCTCTCTCCCAGGGCTTCTCCCAAGGGGCCTGGGCTCACTACGCGCTCGGCCCTGCCGGGGGTCAGCCCCCCAACGCCCGGCGGCCGCTGCCTGCCCCTGACGCCCACCCTGCCCATCTGCGGCCACCTGGGCATCGGGCGCTCCTGGCTGCCCAACCACCTGCGCCACGGGAACAGCGAGGAGGTGCAGGCGGCCGCGCAGGCGTGGGGGGGCNTCCTGTGGACGCACGGCCACCCCTTCCTCGCCTGGCTCTTCTGCCTGCTGCTGGCGCCCCCCTGTGGCCCAGGCCCGCTGCCCCCCCTGCCGCCCTGCCGCCAGTTTTGTGAGGCCGTGGAGGACGCGTGCTGGAGCCGCCTGGACGGGGCCCGGCTGCCTGTGGCCTGTGCCTCGCTGCGTGCCCAGGAGGACGGGCTCTGTGTGTTCATTGGGCCGGCAGCAGAGAGTGCCCACCAGGAGGTGGGGCTGCTTCAGCTCCTCGGGGAGCCCCTGCCCCAGCAGGTCAGGGCCATCGATGACCCTGAGGTCGGGCCGGCCTATGTCTTCGGACTGGACGCCAACAGCGGGCAGGTGGCCCAGTACCACTTGCCCAGCCCCTTCTTCCCTGATTTCTCGCTGCTGTTCCACGTGCGGCCAGACACGGAGGATGCAGGCATGCTGTTTGCCATCACGGACGCTGCACAGGCGGCCGTGGTGCTGGGTGTGAAGCTGTCAGGAGTGCAGGACCAGCACCAGAACATCTCGCTGCTCTACTCAGAGCCGGGCACGAGCCAGACCCACACGGCTGCCAGCTTCCGCCTGCCTGCCTTCGTGGGCCAGTGGACCCGCTTTGCACTCAGCGTGGATGCTGGCTCCGTGGCGCTGTACGTGGACTGTGAGGAGTTCCAGAGGCTGCCATTCGCGCAGTCCCTGGGGCGCCTGGAGCTGGAGCCTGGTGCCGGCCTCTTCGTGGGCCAGGCCGGAGGAGCAGACCCCGACAAGTTTCAGGGGGCGATCGCGGAGCTGTGGGTGCGTGGGGACCCCCGCGTGAGCCCCGTGCACTGCTTGGACGAGGAGGACGAGGACAAGGAGGGGGCATCTGGAGACTTCGGCAGTGGCCTGGAGGAGACCGGAGAGCTTCACCGGGAGACCGGGGTGAGTGTGACGCTCGGTCTCCCCCTGCCTCCGCCCGTGACTCCTCCTCCCCTGGCCAGAGGGGGCAGCGTGGAAGATGCCAGGATGGAGGAGATGGAGGAGCCAAGCACGGCAGCTTCACCACGGCATGAGGCTGTTCCAGCTAAGACCCTTCCTGGCCCAGGTTCGAATGACGCGTGGGACGAGAGTGCCTGGAGCCCGGGGAGCAGCCAGGGGAAGGGAGGCCTGAAGGGGCAGAAGGGGGAGCCGGGAGTTCAGGGGCCACCTGGCCCGGTTGGGCCCCAGGGCCCTGGAGGCTCCATGATGCACGGCCCTGGGGCCCAGGGTCCCCCTGGGCCCCCAGGGAATGACGGTGCCCCAGGCAGGGACGGTGAGCCGGGGGACCCTGGCGAGGACGGAAGACCAGGGGACGCTGGGCCACAGGGCTTCCCGGGGCCCCCGGGGGACGTGGGCCCCAAGGGAGAGAAGGGAGACCTGGGGGTCGGGCCGAGAGGACCCCCAGGGCCCCAAGGGCCGCCGGGGCCGCCAGGACCGTCCTTCAGGCACGACAAGCTGACCTTCATCGACATGGAGGGCTCTGGCTTCAGTGGCGACCTGGAGACCCTCAGGGGCCCACGAGGCTTCCCTGGCCCCCCTGGGCCCCCTGGAGTCCCAGGCTTGCCCGGAGAGCCCGGCCGCTTCGGGGTGAACAGCTCCCACGTTTTGGGACCCCCAGGCCTCCCCGGTGTGCCTGGGCGGGACGGGTCCCCTGGCTTTCCCGGCTCCCCGGGACCCCCAGGACCCCCAGGGAAGGAGGGTCCTCCAGGAAGAGTGGGCCAGAAAGGCAGCCCTGGAGACGTGGGCGCCCCCGGACCCAAGGGCAGCCAAGGAGACCCAGGCCCCGAAGGTTCTCCAGGGGAGACCGGCTTTGCGGGAGCCCCTGGCCCTGCCGGACCCCCAGGACCCCCAGGACCTCCTGGGCCACCCGGACCAAGACTCGCCGCGGGATTTGATGACATGGAAGGCTCCGGGGCCCCCTTCTGGTCCACAGCCGGAGGCTCCGCAGGGCTGCAGGGACCGCCCGGCCTGCCAGGACTGAAGGGGGATCCCGGCCTGCCCGGAGACAAGGGAGAAGTCGGAGCAGATGGAGCTCGAGGGTTCCCCGGGCTCCCAGGCAGCGAGGGTCCCACTGGGCCCATGGGACCAAAAGGCGAGAAAGGCAGCCGGGGAGAAAGAGGCGACCCAGGGAAGGACGGTGTGGGGCAGCCCGGCCTGCCCGGGCCCCCAGGGCCCCCGGGAGCTGTGGTCTATGTGTCGGAGCCGGGTCGAGCCCTGGCCAGCGCGCCGGGCCCTGAGGGCAGGCCGGGCTTCGCGGGCTTCCCCGGACCCGCCGGGCCGAAGGGCGACGAGGGCTCCAAAGGTGCACCAGGCTCCCCGGGACCCAAGGGTGAGAGAGGAGAGCCGGGCGCCATCTTCAGCCCCGATGGCAGAGCCCTGGGCCCTGCGCACAAGGGAGCCAAGGGAGAGCCGGGCTTCCGCGGACCCCCAGGCCCGTACGGGCGGCCTGGGCACAAGGGAGAGATCGGCTTTCCTGGACGGCCGGGTCGCCCCGGGATGAACGGGCTGAAGGGTGAGAAGGGTGAGCCCGGAGATGCCAGCCTCGGATCCGGCGTGAGGGGAATGCCTGGCCCCCCTGGACCTCCGGGCCCCCCCGGGCCCCCTGGGACGCCCGTCTATGACAGCAATGCATTTGTGGAGTCCGGCCGTGCTGGACCTCCAGGACCACGAGGGCTGCCAGGGCCTTCTGGACCAAAGGGCGACAAAGGAGAGGTGGGCCCGCCCGGACCGCCAGGGCAGTTCCCCCTGGACCTCCTCCGCCTGGGAGCTGAGATGAAGGGAGAGAAAGGGGACCGTGGGGACGCCGGACAGAAGGGCCAGATGGGCACGCCCGGGGCCAGTGGCGGCATCTTCGGCTCCAGTGTCCCCGGCCCCCCCGGGTACCCCGGGCCCCCCGGCATCCCGGGTCCCAAGGGAGACAGCATCCAGGGCCCGCCTGGCCCGCCTGGCCCTCAGGGACCTCCGGGCATTGGCTATGAGGGGCGCCAGGGCCCCCCCGGCCCCCCCGGGCCCCCCGGGCCCCCCTCATTTCCCGGCCCGCACAGGCAGACTGTCAGCGTTCCCGGCCCCCCTGGCCCCCCAGGGCCCCCAGGGCCCCCAGGGACCATGGGCACCTCCTCAGGGGTGAGGGCCTGGGCCTCCTACGAGGCCATGCTGGAGAAGGTGCACGAGGTGCCGGAGGGCTGGCTCCTCTTCGTGGCCGAGGATGAGGCGCTCTACGTCCGTGTCCGAAATGGGGTCCGCAAGGTTCTGCTGGAGGCTCGGATGCCACTGCCTAGTGCTACGGACAATGAGGTGGCCGCCCTGCAGCCCCCGCTGGTGCAGCTGCACGGGGGCGGCCCGTACCCGCGGCGGGAGCACTCCTACTCCACTGCGCGGCCCTGGCGGGCGGATGACATCCTGGCCAGCCCCCCGCGCCTGCCAGCCCCCCAGCCCTACCCCGGAGCCCCACACCGCCACGGTGCCTACATGCATCTCCGGCCTGCCAGTCCGACGAGCTTGCCCACCCACACCCACCACGACTTCCAGCCAGTGCTCCACCTGGTGGCACTCAACAGCCCGCTGCCGGGTGACATGCATGGCATCCGAGGGGCTGACTTCCAGTGCTTCCAGCAGGCTCGGGCCGTGGGGCTGAGGGGCACCTTCCGTGCCTTCCTGTCCTCGCGGCTGCAGGACCTCTACAGCATCGTACGCCGTGCAGACCGCGGGGCTGTGCCCATTGTCAACCTCAAGGACGAGGTGCTGTCTCCCAGCTGGGAGGCCCTGTTCTCGGGGTCCCGGGGCCAGCTGAAGCCTGGGGCCCGCATCTTCTCTTTCGACAGCAGGGACGTCCTGAGGCACCCAGCCTGGCCCCAGAAGAGTGTGTGGCATGGCTCCGACCCCAGCGGGCGCCGGCTGACCGAGAGCTACTGTGAGACGTGGCGGACGGAGGAGGCGGCAGCCACAGGCCAGGCCTCGTCACTGCTGGCCGGCAGGCTGCTGGAGCAGAGCCCCTCGAGTTGCCGCAACGCCCACATAGTCCTCTGCATCGAGAACAGTTTCATGACGCCCTCCAAGTAG

Related Sequences

XP_004842574.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain [Heterocephalus glaber]

Length: 1718 aa      View alignments
>XP_004842574.1
MAPDPSRGLRLLLLVACCLAPAQATLLPLDWLWSSKISGSTASPVSQPQGRPSPEPTAAPSTHVAPQHGPLEPRTVPASTRPASEGQAAAWSEAPAAQAASTASLDPKEENVGGVGARILNVAQGIRSFVQLWDDAAPTGTSAAVGTPGPAPPVDPSALAGPSGDPQDSSAASWPSPGAPSLLGPRTAKAGALAVPAWPPLSPAPLRGPPVPPASPGRASLSPLPGGAPPWGSPRPPDLDTEAGAQQRGRPDSRRVLSLVMAAPSALPAGPSAWRFLVAAEPSPGDGSAWLSPRASPKGPGLTTRSALPGVSPPTPGGRCLPLTPTLPICGHLGIGRSWLPNHLRHGNSEEVQAAAQAWGGXLWTHGHPFLAWLFCLLLAPPCGPGPLPPLPPCRQFCEAVEDACWSRLDGARLPVACASLRAQEDGLCVFIGPAAESAHQEVGLLQLLGEPLPQQVRAIDDPEVGPAYVFGLDANSGQVAQYHLPSPFFPDFSLLFHVRPDTEDAGMLFAITDAAQAAVVLGVKLSGVQDQHQNISLLYSEPGTSQTHTAASFRLPAFVGQWTRFALSVDAGSVALYVDCEEFQRLPFAQSLGRLELEPGAGLFVGQAGGADPDKFQGAIAELWVRGDPRVSPVHCLDEEDEDKEGASGDFGSGLEETGELHRETGVSVTLGLPLPPPVTPPPLARGGSVEDARMEEMEEPSTAASPRHEAVPAKTLPGPGSNDAWDESAWSPGSSQGKGGLKGQKGEPGVQGPPGPVGPQGPGGSMMHGPGAQGPPGPPGNDGAPGRDGEPGDPGEDGRPGDAGPQGFPGPPGDVGPKGEKGDLGVGPRGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFSGDLETLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSHVLGPPGLPGVPGRDGSPGFPGSPGPPGPPGKEGPPGRVGQKGSPGDVGAPGPKGSQGDPGPEGSPGETGFAGAPGPAGPPGPPGPPGPPGPRLAAGFDDMEGSGAPFWSTAGGSAGLQGPPGLPGLKGDPGLPGDKGEVGADGARGFPGLPGSEGPTGPMGPKGEKGSRGERGDPGKDGVGQPGLPGPPGPPGAVVYVSEPGRALASAPGPEGRPGFAGFPGPAGPKGDEGSKGAPGSPGPKGERGEPGAIFSPDGRALGPAHKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGSGVRGMPGPPGPPGPPGPPGTPVYDSNAFVESGRAGPPGPRGLPGPSGPKGDKGEVGPPGPPGQFPLDLLRLGAEMKGEKGDRGDAGQKGQMGTPGASGGIFGSSVPGPPGYPGPPGIPGPKGDSIQGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPPGPPGPPGTMGTSSGVRAWASYEAMLEKVHEVPEGWLLFVAEDEALYVRVRNGVRKVLLEARMPLPSATDNEVAALQPPLVQLHGGGPYPRREHSYSTARPWRADDILASPPRLPAPQPYPGAPHRHGAYMHLRPASPTSLPTHTHHDFQPVLHLVALNSPLPGDMHGIRGADFQCFQQARAVGLRGTFRAFLSSRLQDLYSIVRRADRGAVPIVNLKDEVLSPSWEALFSGSRGQLKPGARIFSFDSRDVLRHPAWPQKSVWHGSDPSGRRLTESYCETWRTEEAAATGQASSLLAGRLLEQSPSSCRNAHIVLCIENSFMTPSK