Sequence details NCBI ID: XM_004842437.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Rsph1
Gene Name radial spoke head 1 homolog (Chlamydomonas)
Entrez Gene ID 101708501

Database interlinks

Part of NW_004624745.1 (Scaffold)

For more information consult the page for NW_004624745.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

RSPH1 ENSCPOG00000002266 (Guinea pig)

Gene Details

radial spoke head 1 homolog (Chlamydomonas)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002057, Guinea pig)

Protein Percentage 81.4%
CDS Percentage 82.61%
Ka/Ks Ratio 0.13 (Ka = 0.1087, Ks = 0.8362)

RSPH1 ENSG00000160188 (Human)

Gene Details

radial spoke head 1 homolog (Chlamydomonas)

External Links

Gene Match (Ensembl Protein ID: ENSP00000291536, Human)

Protein Percentage 77.59%
CDS Percentage 79.15%
Ka/Ks Ratio 0.1402 (Ka = 0.1349, Ks = 0.9625)

Rsph1 ENSMUSG00000024033 (Mouse)

Gene Details

radial spoke head 1 homolog (Chlamydomonas)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000024832, Mouse)

Protein Percentage 78.04%
CDS Percentage 79.84%
Ka/Ks Ratio 0.12594 (Ka = 0.1328, Ks = 1.0544)

Rsph1 ENSRNOG00000001168 (Rat)

Gene Details

radial spoke head 1 homolog (Chlamydomonas) (Rsph1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000001542, Rat)

Protein Percentage 78.31%
CDS Percentage 77.97%
Ka/Ks Ratio 0.09532 (Ka = 0.1391, Ks = 1.4592)

Genome Location

Sequence Coding sequence

Length: 906 bp    Location: 28009055..28020113   Strand: +
Raw sequence   
>XM_004842437.1
ATGTCGGATCTGGGCTCCGAGGAGCTGGAGGAGGAGGGAGAGGACAATCTTGGGGAGTACGAAGGGGAGCGAAATGAGGCCGGCGAGCGGCACGGACAGGGCAGAGCCCGGCTGCCCAACGGGGATGTGTACGAAGGCAGCTACGAATTCGGGCAAAGGAGTGGCCAGGGGATCTACAAGTTTAAAAATGGTGCCCGGTACACTGGACAATATCTTAAAAATAAAAAGCATGGTCAAGGCATTTTTATATATCCAGATGGATCAAGATATGAAGGGGAGTGGGCAGATGACCAGAGGCACGGGCACGGCGTGTACTACTACGTCAACAATGACACCTACACCGGGGAGTGGCTCGCTCACCAAAGGCACGGGCAGGGGACCTACTTCTACGCGGAGACGGGCAGCAAGTATGTGGGCACCTGGGTGCACGGCCAGCAGGTGGGCGCGGCCGAGCTCATCCACCTGAACCACAGATACCAGGGCAAGTTCCTGAACAAAAATCCTGTCGGGCCTGGAAAGTACATATTCGACGTTGGATGTGAACAGCATGGCGAGTACCGCCTGACAGATGTGGAGATAGTAGAAGAGGAGGAAGAGGAGGAGACCTCAGTCAATGTGGTTCCAAAATGGAAAGCGACCCAGATCACAGAGCTGGCTCTGTGGACCCCGACCCTCCCCGAGCAGAAGCCCCCCTCAGATGGAGCTGGCCCGGAGGAGACGCTCGAGGTGGAGGGCGCCACTGAGCTCGAGGAGGAAACCCAGGATCTGCCCAAAGCTTTGGAGGGTGAGCTGGATCTGCGGCCGGGAGAGGAGGACGCGGACACCTGGGAGAACAGTTATGACGTGGACCAGGCAAACGCCAGCTTTGAGGAAGAGGAAGAAAGACAGGCCGAGCTGCAGGACTGA

Related Sequences

XP_004842494.1 Protein

Rsph1 PREDICTED: radial spoke head 1 homolog [Heterocephalus glaber]

Length: 301 aa      View alignments
>XP_004842494.1
MSDLGSEELEEEGEDNLGEYEGERNEAGERHGQGRARLPNGDVYEGSYEFGQRSGQGIYKFKNGARYTGQYLKNKKHGQGIFIYPDGSRYEGEWADDQRHGHGVYYYVNNDTYTGEWLAHQRHGQGTYFYAETGSKYVGTWVHGQQVGAAELIHLNHRYQGKFLNKNPVGPGKYIFDVGCEQHGEYRLTDVEIVEEEEEEETSVNVVPKWKATQITELALWTPTLPEQKPPSDGAGPEETLEVEGATELEEETQDLPKALEGELDLRPGEEDADTWENSYDVDQANASFEEEEERQAELQD