Details from NCBI annotation

Gene Symbol Lca5l
Gene Name Leber congenital amaurosis 5-like, transcript variant X2
Entrez Gene ID 101712819

Database interlinks

Part of NW_004624745.1 (Scaffold)

For more information consult the page for NW_004624745.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LCA5L ENSCPOG00000021836 (Guinea pig)

Gene Details

Leber congenital amaurosis 5-like

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018795, Guinea pig)

Protein Percentage 74.61%
CDS Percentage 78.37%
Ka/Ks Ratio 0.2061 (Ka = 0.1602, Ks = 0.7775)

LCA5L ENSG00000157578 (Human)

Gene Details

Leber congenital amaurosis 5-like

External Links

Gene Match (Ensembl Protein ID: ENSP00000351008, Human)

Protein Percentage 66.2%
CDS Percentage 72.22%
Ka/Ks Ratio 0.19466 (Ka = 0.2332, Ks = 1.1979)

Lca5l ENSMUSG00000045275 (Mouse)

Gene Details

Leber congenital amaurosis 5-like

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000061337, Mouse)

Protein Percentage 62.18%
CDS Percentage 69.2%
Ka/Ks Ratio 0.20363 (Ka = 0.2724, Ks = 1.3378)

Lca5l ENSRNOG00000028248 (Rat)

Gene Details

Leber congenital amaurosis 5-like (Lca5l), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000038113, Rat)

Protein Percentage 58.18%
CDS Percentage 66.04%
Ka/Ks Ratio 0.25739 (Ka = 0.3361, Ks = 1.3059)

Genome Location

Sequence Coding sequence

Length: 1953 bp    Location: 24580156..24619381   Strand: +
>XM_004842361.1
ATGTCCCTGGCTGATACAACAAAACCCCACACGGATGAGCCCTTCCCCGCCGTGGTCCTGGAGACTGACGGCCAGCCCACCAGCAGCAGGCCGTCCAGCGGCAGCATGGACCTCAGCCAGTCCCAGTGCTCCTGCGGGAGCCTGCACTCTAACTGCGACTACTCAGAGGACTTCATCTCCCTGTGCTTCGACCCAGCCACCAACAGGAACTGTGTGGAGCAGCCGGAGGTGAAAGAGAAGAAAAAGTACACTGCGCCCAAACTCGCCCAGCCTAAGGGTCAGAAGGAAATCTCCGTTGGAAAAAAGCACCCCTGGAATGCGCCAGGCCTCCACTCCCAGCTCAGTCTGCTAGCGCACCACCGGAGAGACCCCACGGCCCACCGGATCCTCTCCGCGCGGCTCCACAAGATTAAAGAGCTGAAAAACGAACTGGCCGACATCCATCGTAAACTGGAGTCCATCATCACAGAAAACCAATTTTTGAAACAACTTCAGTTTAGGCACTTGAAAGCGATAGGAAAATACGAGAACTCGCAAAGCAACTTACCTCAAGTTATGATTAAACATCAGAATGAAGTGAAAAATTTAAGGCAGCTACTTAGGAAATCCCAGGAGAAGGAAAGATCTGTCTCTAGGAAACTCAGGGAAACCGACAGCGAGTTGCTGAAGACCAGGGATGCCCTGCAGGCGCTGCAGAAACTCTCCGAGGACAAGAACCTTGCAGAAAGGGAAGAACTGACCCATAAATTGTCTGCTCTGGCAGCAAAAATGGAGGCGAATGACAAGAAAATACAGAGGTTGGAAAGACAGCTGAGGCTGAACACTCAGGCCTTCAACCGCCAGCTGGCAACGGAAAACCAGAAGACTCAGGCAGCTCAGACGGCCACGAAGTCCCTGCAAGAGGAGCTCAGGCTCCTGCAGCAGAAACTCAAGGAAAAGGAGCATGAGCTTGAAATTAAAAACATCTATACTAATCGAATCCTTAGAAATATACGGGAACTAGAAGATTACCCAAAAGTTTCTTCAACAAAATCAGTACAAGCGGACAGAAAAAGCTTGTCATTTGTAAGTATGAGACACCAGGAAACCCAAAAGTCAGAAGATGTTCCATCTTTGACTACTAAGGGTAAAAACATAACAAGAAACATTCATCCTAAAGAGAAATCAAGTGAAATAAACCATGAAGTTCCTCACTATATCAGTAAACTGCCAAAGCAAGATGATTCAAAGAGAGAATTTGAAGATTTATCAAAGGAAGAGGAATATCTGGAAGTACATGCACCTCTGGAGAATACTGGACGACATAAAGAGAAGGAAGATCAAGAAAAGAAACCCCTTTTGCAAGAACAAGAGCTACTCCCCCAAAACACTCCAGCTGTCCCCCCTGACAGAGAAAGCGGTCAGGATGATGATGCAGAAAAAGAAAAGTTTAAAAGCGTCCAGCTGTGCGAGGCGGAGGAGAGCTCCGACCACGGCGCCGTCCCCAACGCCAAGGCTCCCTGCAGGCAAAGGAAGCTGTACTCGTTCACGGAAGCCACCGAAAACCTGCACCACGGGCTTCCCGCGTGCGGCGGGCACGCTCAAGGGCACGGCGCCTACAAGCATCGGAGTGGCGGCGCCGAGGAGCCGAAGCCGGACGCGCCCAGTGGGTACGAGCCCTCCTTCGGGAAGTCTTCCCGGATCAAAGCAAAGGACCCCGCCTTCCAGGAGCGGAAGAGCAGCCTGATGGAGGAGCTCTTCGGGGCCGGCTGTGTCCTGAAGGCCGAGCACGCTGCTCCTGGGGCCGTGGACGGCGGCAAGGAGCCCCCGAGACAGAAGGCGCCCACGCCCCCGACGCCGCTGCAGACGCCAGGCCGAGGCCGAGCCTCGGCCAGCAACGCATTCGGGGGCTCCAAGGCCACCGTGGGCAGCTCCATGCAGTCTCCACCCACGGAAGGAAAAAGAGTTGTTTAA

Related Sequences

XP_004842418.1 Protein

Lca5l PREDICTED: lebercilin-like protein isoform X2 [Heterocephalus glaber]

Length: 650 aa      View alignments
>XP_004842418.1
MSLADTTKPHTDEPFPAVVLETDGQPTSSRPSSGSMDLSQSQCSCGSLHSNCDYSEDFISLCFDPATNRNCVEQPEVKEKKKYTAPKLAQPKGQKEISVGKKHPWNAPGLHSQLSLLAHHRRDPTAHRILSARLHKIKELKNELADIHRKLESIITENQFLKQLQFRHLKAIGKYENSQSNLPQVMIKHQNEVKNLRQLLRKSQEKERSVSRKLRETDSELLKTRDALQALQKLSEDKNLAEREELTHKLSALAAKMEANDKKIQRLERQLRLNTQAFNRQLATENQKTQAAQTATKSLQEELRLLQQKLKEKEHELEIKNIYTNRILRNIRELEDYPKVSSTKSVQADRKSLSFVSMRHQETQKSEDVPSLTTKGKNITRNIHPKEKSSEINHEVPHYISKLPKQDDSKREFEDLSKEEEYLEVHAPLENTGRHKEKEDQEKKPLLQEQELLPQNTPAVPPDRESGQDDDAEKEKFKSVQLCEAEESSDHGAVPNAKAPCRQRKLYSFTEATENLHHGLPACGGHAQGHGAYKHRSGGAEEPKPDAPSGYEPSFGKSSRIKAKDPAFQERKSSLMEELFGAGCVLKAEHAAPGAVDGGKEPPRQKAPTPPTPLQTPGRGRASASNAFGGSKATVGSSMQSPPTEGKRVV