Details from NCBI annotation

Gene Symbol Runx1
Gene Name runt-related transcription factor 1, transcript variant X1
Entrez Gene ID 101705852

Database interlinks

Part of NW_004624745.1 (Scaffold)

For more information consult the page for NW_004624745.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

RUNX1 ENSCPOG00000002684 (Guinea pig)

Gene Details

runt-related transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002437, Guinea pig)

Protein Percentage 98.23%
CDS Percentage 95.12%
Ka/Ks Ratio 0.0573 (Ka = 0.0117, Ks = 0.2045)

RUNX1 ENSG00000159216 (Human)

Gene Details

runt-related transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000300305, Human)

Protein Percentage 96.86%
CDS Percentage 92.75%
Ka/Ks Ratio 0.04133 (Ka = 0.014, Ks = 0.338)

Runx1 ENSMUSG00000022952 (Mouse)

Gene Details

runt related transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000023673, Mouse)

Protein Percentage 96.33%
CDS Percentage 90.5%
Ka/Ks Ratio 0.0298 (Ka = 0.0161, Ks = 0.5398)

Runx1 ENSRNOG00000001704 (Rat)

Gene Details

runt-related transcription factor 1 (Runx1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000002313, Rat)

Protein Percentage 95.09%
CDS Percentage 88.84%
Ka/Ks Ratio 0.03835 (Ka = 0.0254, Ks = 0.6625)

Genome Location

Sequence Coding sequence

Length: 1437 bp    Location: 23158232..22925188   Strand: -
>XM_004842342.1
ATGGCTTCAGACAGCATATTTGAGTCATTTCCTTCGTACCCACAGTGCTTCATGAGAGAATACATACATGAAATGAATTCTTCTAGAGATGTTCACGATGCCAGCACGAGCCGCCGCTTCACGCCGCCTTCCACCGCGCTGAGCCCGGGCAAGATGAGCGAGGCGGTGCCGCTGGGCGCCCCGGACGCCGGCGCCGCCCTGGCCGGGAAGCTGAGAAGCGGCGACCGCAGCATGGTGGAGGTGCTGGCCGACCACCCCGGCGAGCTGGTGCGCACCGACAGCCCCAACTTCCTCTGCTCTGTGCTCCCCACGCACTGGCGCTGCAACAAGACCCTGCCCATCGCTTTCAAGGTGGTGGCTCTGGGGGAAGTTCCAGATGGTACTCTGGTCACGGTGATGGCTGGCAACGATGAAAACTACTCAGCTGAGCTCAGAAATGCTACTGCAGCTATGAAGAACCAAGTTGCAAGATTCAATGACCTCAGGTTTGTCGGTCGGAGTGGGAGAGGGAAGAGCTTCACTCTGACCATCACTGTCTTCACAAACCCTCCACAAGTTGCCACCTATCACAGAGCCATCAAAATCACCGTGGATGGACCCCGAGAACCCCGGAGACATCGTCAGAAACTAGATGATCAGACCAAGCCTGGGAGCTTGTCCTTTTCCGAGCGGCTCAGTGAACTGGAGCAGCTGCGGCGCACGGCCATGAGGGTCAGCCCGCACCACCCAGCCCCCACGCCCAACCCTCGCGTGAACCACTCCACTGCCTTTAACCCTCAGCCTCAGAGCCAGATGCAGGATACAAGGCAGATCCAGCCATCCCCACCATGGTCCTACGATCAGTCCTACCAGTATCTGGGATCCATCACCACTCCTTCCGTGCACCCCGCAACACCCATTTCGCCTGGACGTGCCAGTGGCATGACAAGCCTCTCTGCAGAGCTTTCCAGTCGGCTCTCAACTGCTCCTGACCTGGCAGCCTTCGGCGACCCACGCCAGTTCCCCGCACTGCCCTCCATCTCCGATCCTCGCATGCACTACCCTGGCGCCTTCACCTACTCCCCAACACCGGTCACGTCGGGGATCGGCATAGGCATGTCGGCGATGAGCTCAGCCTCACGCTACCACACGTACCTGCCACCCCCCTACCCCGGCTCGTCGCAGGCGCAGGGCGGCCCCTTCCAGGCCAGCTCTCCTTCCTACCACCTGTACTACGGGGCCTCGGCCGGCTCCTACCAGTTCTCCATGGTGGGCGGCGAGCGGTCCCCTCCGCGCATCCTGCCGCCCTGCACCAACGCCTCCACGGGCTCGGCGCTGCTCAACCCCAGCCTCCCAAACCAGAGCGATGTGGTGGAGGCTGAGGGCAGCCACAGCAACTCGCCCACCAACATGGCGCCTGCCGCGCGCCTGGAGGAGGCCGTGTGGCGGCCCTACTGA

Related Sequences

XP_004842399.1 Protein

Runx1 PREDICTED: runt-related transcription factor 1 isoform X1 [Heterocephalus glaber]

Length: 478 aa      View alignments
>XP_004842399.1
MASDSIFESFPSYPQCFMREYIHEMNSSRDVHDASTSRRFTPPSTALSPGKMSEAVPLGAPDAGAALAGKLRSGDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGEVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRVNHSTAFNPQPQSQMQDTRQIQPSPPWSYDQSYQYLGSITTPSVHPATPISPGRASGMTSLSAELSSRLSTAPDLAAFGDPRQFPALPSISDPRMHYPGAFTYSPTPVTSGIGIGMSAMSSASRYHTYLPPPYPGSSQAQGGPFQASSPSYHLYYGASAGSYQFSMVGGERSPPRILPPCTNASTGSALLNPSLPNQSDVVEAEGSHSNSPTNMAPAARLEEAVWRPY