Sequence details NCBI ID: XM_004842288.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Synj1
Gene Name synaptojanin 1, transcript variant X1
Entrez Gene ID 101718278

Database interlinks

Part of NW_004624745.1 (Scaffold)

For more information consult the page for NW_004624745.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SYNJ1 ENSCPOG00000012182 (Guinea pig)

Gene Details

synaptojanin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010955, Guinea pig)

Protein Percentage 93.1%
CDS Percentage 92.66%
Ka/Ks Ratio 0.17008 (Ka = 0.0355, Ks = 0.2089)

SYNJ1 ENSG00000159082 (Human)

Gene Details

synaptojanin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000409667, Human)

Protein Percentage 92.95%
CDS Percentage 91.2%
Ka/Ks Ratio 0.13016 (Ka = 0.0375, Ks = 0.2882)

Synj1 ENSMUSG00000022973 (Mouse)

Gene Details

synaptojanin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000113308, Mouse)

Protein Percentage 90.26%
CDS Percentage 87.1%
Ka/Ks Ratio 0.12028 (Ka = 0.0548, Ks = 0.4558)

Synj1 ENSRNOG00000002051 (Rat)

Gene Details

synaptojanin-1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000045019, Rat)

Protein Percentage 89.95%
CDS Percentage 86.75%
Ka/Ks Ratio 0.12406 (Ka = 0.0581, Ks = 0.468)

Genome Location

Sequence Coding sequence

Length: 4836 bp    Location: 20984184..20881317   Strand: -
Raw sequence   
>XM_004842288.1
ATGCGGAAGAGATGGGCCTGCTGGAGCGGAAGTGACGCTTCCGGCGGCTGTGGCGGCGGCGGCTGCGGCGGCGGCGGCTGCGGGAGCGGGAGGAGGAGGAGCCGGAGGAAGAGGGCTGCCTCTGAAGAAAGGAGAATGGCGTTCAGCAAAGGATTTCGGATCTATCACAAATTGGATCCCCCACCTTTCAGCCTCATAGTGGAAACTAGGCATAAAGAAGAATGTCTCATGTTCGAGTCTGGGGCTGTGGCTGTGCTGTCATCTGCAGAAAAAGAGGCAATCAAGGGTATATACTCCAAAGTCCTGGATGCATATGGACTCTTAGGTGTTTTGCGGTTGAATCTTGGTGATACTATGTTACATTATCTGGTCCTGGTCACTGGATGTATGTCTGTTGGAAAAATTCAAGAATCTGAAGTTTTCCGAGTTACTTCTACCGAGTTTATATCACTTCGAGTTGATGCTTCAGATGAGGATCGCATTTCAGAAGTGCGAAAGGTTTTGAATTCAGGAAACTTTTATTTTGCATGGTCTGCATCTGGAGCCAGTTTAGATCTGAGTCTCAATGCACATCGGAGCATGCAAGAACACACCACTGACAATAGATTTTTCTGGAATCAGTCTTTGCATTTGCATTTCAAGCACTATGGTGTGAATTGTGATGACTGGTTATTACGCCTCATGTGTGGGGGTGTAGAAATCAGAACAATTTATGCTGCTCATAAACAGGCAAAGGCTTGTCTCATTTCAAGATTAAGTTGTGAACGAGCCGGTACAAGGTTCAATGTCCGAGGAACAAATGATGATGGTCATGTTGCCAACTTTGTCGAAACAGAACAGGTTGTATACTTAGATGATTCTGTTTCTTCCTTCATACAAATCCGGGGATCTGTTCCATTGTTCTGGGAGCAACCAGGGTTGCAAGTGGGATCACATCGTGTCCGTATGTCAAGGGGTTTTGAAGCCAATGCACCTGCATTTGACAGGCATTTTAGAACACTTAAGAATTTGTATGGCAAACAAATAATAGTAAATTTACTTGGATCAAAGGAAGGTGAACATATGCTAAGTAAGGCTTTCCAAAGTCATTTGAAAGCTTCTGAACATGCTGCAGATATCCACATGGTGAATTTTGACTATCATCAAATGGTTAAAGGAGGAAAAGCAGAAAAATTACATAGTGTTCTTAAACCTCAAGTCCAGAAGTTTCTAGATTATGGATTTTTTTATTTCGATGGAAGTGAGGTTCAAAGGTGCCAGAGTGGTACAGTTCGAACAAACTGCTTGGATTGCCTTGATAGAACAAATAGTGTGCAGGCATTCCTTGGCTTAGAGATGCTAGCTAAACAGTTGGAGGCTCTCACCTTGGCTGAAAAGCCTCAGTTGGTGACTCGCTTTCAAGAAGTTTTTCGGTCCATGTGGTCTGTGAATGGCGATTCAATCAGTAAGATCTATGCAGGCACTGGAGCTCTTGAAGGGAAGGCTAAGTTAAAAGATGGTGCTCGTTCAGTCACCAGAACAATTCAGAATAATTTCTTTGACAGTTCCAAGCAAGAGGCCATTGATGTCCTGCTACTGGGAAATACTCTCAATAGTGACTTAGCTGACAAAGCTCGAGCACTTTTAACTACTGGGAGCTTGCGTGTTTCTGAACAGACATTACAGTCAGCATCTTCCAAAGTACTAAAGAGTATGTGTGAGAACTTCTACAAGTACTCAAAGCCGAAGAAGATTCGAGTGTGTGTGGGGACCTGGAATGTAAATGGTGGGAAGCAGTTCCGCAGCATTGCTTTTAAGAACCAGACGCTCACCGACTGGCTTCTTGATGCACCCAAGTTAGCCGGCATCCAAGAATTTCAAGATAAAAGAAGTAAGCCAACTGATATATTTGCAATTGGTTTTGAAGAAATGGTAGAGTTGAATGCTGGAAACATTGTGAATGCAAGTACAACAAATCAGAAGCTCTGGGCCGTGGAACTTCAGAAGACAGTCTCCAGAGACAACAAGTATGTGCTGCTGGCTTCTGAGCAGTTGGTGGGCGTTTGTCTGTTTGTTTTTATCAGGCCACAACACGCTCCTTTTATCAGGGATGTGGCGGTTGATACTGTGAAGACTGGGATGGGAGGTGCGACTGGAAATAAGGGAGCAGTTGCAATCCGAATGCTCTTCCACACCACCAGCCTCTGCTTCGTCTGTAGCCACTTTGCTGCAGGACAGTCACAAGTCAAAGAAAGAAATGAAGATTTTATAGAAATAGCACGAAAATTGAGTTTTCCCATGGGAAGATTGCTGTTTTCCCATGACTATGTGTTTTGGTGTGGTGACTTCAACTATCGAATCGATCTTCCAAATGAAGAAGTTAAAGAGCTCATAAGGCAGCAAAATTGGGATTCCCTTATAGCAGGAGATCAACTTATCAATCAGAAGAATGCTGGACAGATTTTTAGAGGATTTCTAGAGGGAAAAGTTACCTTTGCTCCGACCTATAAATATGACTTGTTTTCTGATGACTATGACACCAGTGAGAAGTGTCGCACCCCTGCGTGGACAGACCGTGTCCTCTGGAGAAGAAGGAAGTGGCCTTTTGATAGATCAGCCGAAGACTTAGATCTTCTGAATGCTAGCTTTCAAGATGAAAGCAAAATCCTCTACACGTGGACTCCTGGCACTTTGCTGCACTATGGAAGAGCTGAGCTGAAGACTTCTGACCATAGGCCTGTCGTTGCCCTGATTGATATAGATATATTTGAAGTTGAAGCTGAAGAGAGGCAAAACATTTACAAAGAAGTAATTACAGTTCAGGGTCCACCAGATGGTACAGTGTTGGTCTCAATCAAAAGTTCTTTACAAGAAGATAATTTTTTTAATGATGCCTTGATTGATGAGCTTCTGCAGCAATTTGCAAATTTTGGTGAAGTTACACTCATAAGATTTGTAGAAGATAAAATGTGGGTTACATTTTTGGAAGGAAGCTCTGCCTTGAGTGTTCTGAGCCTAAATGGTAAAGAGCTATTGAATCGGACTGTAACTATCACTTTAAAAAGTCCAGACTGGATCAAAAATTTGGAAGAAGAAATGAGTTTAGAGAAAATCAGTGTCACATTGCCTTCATCAACAAGCTCCACCCTGCTTGGTGAAGATGCTGAGGTTGCAGCAGATTTCGACATGGAAGGTGATGTCGATGACTACAGTGCCGAAGTGGAGGAACTTCTTCCTCAGCATCTGCAGCCATCCTCAAGTTCTGGCCTCGGCACTTCCCCAAGCTCTTCACCCCGGACAAGTCCCTGCCAGTCACCTACAATAGCAGAGGCTCCTGTACCTTGCCTTCCCATCAGACCAAGTCGAGCTCCATCGAGAACCCCGGGGCCTCCGAGTTCACAGAGTTCTCCTGTGGACACTCAGCCAGCAGCCCAGCCACAGCAGAAAGAGTCCTCCCAGACCCTAGAGCCCAAGCGGCCACCCCCTCCCAGGCCGGGAGCTCCCCCCACACGCCCCACGCCCCCACAGAGACCCCCACCACCTTCAGGGGCTAGGAGTCCTGCACCTGCTAGAAAGGAATTTGGAGGTATTGGAGCCCCTCCCAGTCCTGGGGTAGCTAGGAGAGAGATGGAAGCACCCAAAAGCCCTGGAACAACACGGAAAGAAAATATAGGACGCAATCAGCCTTCATCTCAAGCAGGATTTGGAGGCCCAGGACCTGCTGGACCCAGTACAGCCAGACCGACAATTCCGCCCCGGGCTGGAGTTATCAGCGCCCCCCAGAGTCATGCTCGGGCATCTGCTGGAAGACTGACTCCAGAAAGCCAAAGCAAGCCACCAGAGGCATCGAAAGGCTCAACACTCCTTCCAGAACCACTGAAGCCCCAGGCTGCATTTCCCGTGCAGCCGTCCCTGCCCTCACCTGCGCCAAAGTTCCAGGAGCCTCTCGTCCCCACGGCAGCACCCATGCCTCAGCTTGGCCCCCAGCCCACTTTGGAAACCCCACCTCAGCCCCCGCCTCGGAGCAGGTCGTCCCAGGGCTTGCCTTCAGAGTCTTCACCACAGCCACAAGTAAAAACAAATGGAGTCTCAAGTGTCAAACAAGAATCACTATTAAAGAGTGACCCATTCGAAGATCTGTCATTTAATCTGCTTGCTGTATCAAAGGCTCAGCTATCTGTCCAGACGTCACCTGTTCTAACCCCAGACCCAGAGAGGTTGATTCAGTTGCCTCCTGCAACGCAAAGTACTGTTAATACTTGGAGTTCTGTAAGCTGCATGCCAACCATGCCTCCAATTCCAGCCCGGAGCCAGGAAAATACGCGAAGTTCTCCGAACCCATTTATTACTAGCTTGACCAGCACAAATCCTTTCACCGACAGGACTGCTGTTCCTGGAAATCCATTTAGAGCCCAGTCTCAAGAATCAGAGGCAACTTCCTGGCTCTCCAAAGAAGAGCCTATTACAAACAGTCCTGTCCCTTCACTGATGCCTCTCCGCCAGAACTCAAGCAAGCCTTCATCTTCACTCGATTGTTTTAAGGACAGTTTTGATCTGCAGGGCCAGTCTACAGTGAAAACAAGCAATCCAAAAGGATGGGTAACCTTCGAGGAAGAAGAAGACTTTGGTGTAAAAGGGAAGTCAAAGTCATTTTGTCCAAACGCACTGGGAAATCAACCAAATGCATTTGATGATGACTGGAACAAAGGTGCAGATGTTTCTTTGTGTGTGTTGCCATCCAGAAGACCTCCTCCTCCTCCTGTCCCTCTGCTCCCACCCAGTGCCAGCCCTGCCACCGACCCCTTCACCACCTTGGCATCTAAGGCATCGCCCACACAGGACTTTACAGAAAGATGA

Related Sequences

XP_004842345.1 Protein

Synj1 PREDICTED: synaptojanin-1 isoform X1 [Heterocephalus glaber]

Length: 1611 aa      View alignments
>XP_004842345.1
MRKRWACWSGSDASGGCGGGGCGGGGCGSGRRRSRRKRAASEERRMAFSKGFRIYHKLDPPPFSLIVETRHKEECLMFESGAVAVLSSAEKEAIKGIYSKVLDAYGLLGVLRLNLGDTMLHYLVLVTGCMSVGKIQESEVFRVTSTEFISLRVDASDEDRISEVRKVLNSGNFYFAWSASGASLDLSLNAHRSMQEHTTDNRFFWNQSLHLHFKHYGVNCDDWLLRLMCGGVEIRTIYAAHKQAKACLISRLSCERAGTRFNVRGTNDDGHVANFVETEQVVYLDDSVSSFIQIRGSVPLFWEQPGLQVGSHRVRMSRGFEANAPAFDRHFRTLKNLYGKQIIVNLLGSKEGEHMLSKAFQSHLKASEHAADIHMVNFDYHQMVKGGKAEKLHSVLKPQVQKFLDYGFFYFDGSEVQRCQSGTVRTNCLDCLDRTNSVQAFLGLEMLAKQLEALTLAEKPQLVTRFQEVFRSMWSVNGDSISKIYAGTGALEGKAKLKDGARSVTRTIQNNFFDSSKQEAIDVLLLGNTLNSDLADKARALLTTGSLRVSEQTLQSASSKVLKSMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQEFQDKRSKPTDIFAIGFEEMVELNAGNIVNASTTNQKLWAVELQKTVSRDNKYVLLASEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKERNEDFIEIARKLSFPMGRLLFSHDYVFWCGDFNYRIDLPNEEVKELIRQQNWDSLIAGDQLINQKNAGQIFRGFLEGKVTFAPTYKYDLFSDDYDTSEKCRTPAWTDRVLWRRRKWPFDRSAEDLDLLNASFQDESKILYTWTPGTLLHYGRAELKTSDHRPVVALIDIDIFEVEAEERQNIYKEVITVQGPPDGTVLVSIKSSLQEDNFFNDALIDELLQQFANFGEVTLIRFVEDKMWVTFLEGSSALSVLSLNGKELLNRTVTITLKSPDWIKNLEEEMSLEKISVTLPSSTSSTLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTIAEAPVPCLPIRPSRAPSRTPGPPSSQSSPVDTQPAAQPQQKESSQTLEPKRPPPPRPGAPPTRPTPPQRPPPPSGARSPAPARKEFGGIGAPPSPGVARREMEAPKSPGTTRKENIGRNQPSSQAGFGGPGPAGPSTARPTIPPRAGVISAPQSHARASAGRLTPESQSKPPEASKGSTLLPEPLKPQAAFPVQPSLPSPAPKFQEPLVPTAAPMPQLGPQPTLETPPQPPPRSRSSQGLPSESSPQPQVKTNGVSSVKQESLLKSDPFEDLSFNLLAVSKAQLSVQTSPVLTPDPERLIQLPPATQSTVNTWSSVSCMPTMPPIPARSQENTRSSPNPFITSLTSTNPFTDRTAVPGNPFRAQSQESEATSWLSKEEPITNSPVPSLMPLRQNSSKPSSSLDCFKDSFDLQGQSTVKTSNPKGWVTFEEEEDFGVKGKSKSFCPNALGNQPNAFDDDWNKGADVSLCVLPSRRPPPPPVPLLPPSASPATDPFTTLASKASPTQDFTER