Sequence details NCBI ID: XM_004842250.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Usp16
Gene Name ubiquitin specific peptidase 16, transcript variant X2
Entrez Gene ID 101703447

Database interlinks

Part of NW_004624745.1 (Scaffold)

For more information consult the page for NW_004624745.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

USP16 ENSCPOG00000009390 (Guinea pig)

Gene Details

ubiquitin specific peptidase 16

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008431, Guinea pig)

Protein Percentage 84.67%
CDS Percentage 88.32%
Ka/Ks Ratio 0.27919 (Ka = 0.0887, Ks = 0.3176)

USP16 ENSG00000156256 (Human)

Gene Details

ubiquitin specific peptidase 16

External Links

Gene Match (Ensembl Protein ID: ENSP00000334808, Human)

Protein Percentage 88.19%
CDS Percentage 90.34%
Ka/Ks Ratio 0.21475 (Ka = 0.0614, Ks = 0.2861)

Usp16 ENSMUSG00000025616 (Mouse)

Gene Details

ubiquitin specific peptidase 16

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000026710, Mouse)

Protein Percentage 78.81%
CDS Percentage 82.91%
Ka/Ks Ratio 0.23121 (Ka = 0.1257, Ks = 0.5436)

Usp16 ENSRNOG00000001598 (Rat)

Gene Details

ubiquitin specific peptidase 16 (Usp16), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000002173, Rat)

Protein Percentage 80.17%
CDS Percentage 84.02%
Ka/Ks Ratio 0.25081 (Ka = 0.1192, Ks = 0.4753)

Genome Location

Sequence Coding sequence

Length: 2475 bp    Location: 17005072..17029220   Strand: +
Raw sequence   
>XM_004842250.1
ATGGGGAAGAAAAGGACAAAGGGAAAAACTGTTTCAGTTGATGATTCCTCTGAATCTTCAGAACCTATATGCAGACACATTAGAAAAGGATTGGAAGAAGGTCATTTGAGAAAGGCGTTAGTGGATGTAGAATGGAATATTTGCCAAGGCTGTAAGATGGACAATAAGGTAAAAGATAAATCTGAAGAAGACACAGAAGAAAATCCTTCAGTTTGGCTGTGTCTTAAATGTGGGCATCAGGGCTGTGGCAGAAATTCTCAGGAGCAGCATGCCTTGAAGCACTACATGATACCGAGATCTGAGTCTCACTGTCTGGTTCTTAGTTTGGACAACTGGAGTGTCTGGTGTTACATGTGTGATACTGAAGTCCAGTATTGCAGTTCAAGCCAATTGGGCCAAGTGGTTGATTATATTAAAAAACAATCCACCGTAACATCTCCAAAACTAGCAGAGAAAGATAATGGCAACATTGAACTTGAAAATAAAAAATTAGAAAAAGAAAGTAAAAATGAGCAGGAGAGAGAAAAAAAGGAAAACATGGCTAAAGAAAATCTTCCCATGAATTCTGCTTCCCAAATTACAGTGAAAGGACTCAGTAATTTGGGAAATACATGTTTCTTCAATGCAGTTATGCAGAATTTGTCACAAACACCAGTGCTTAGAGAACTACTAAAAGAAGTGAAAATGTCTGGAGCAATTATAAAAATCGAACCACCTGATTTGGCACTAACAGAATCCCTAGAAATAAACCTTGAGCCTCCCGGCCCTCTTACTTTAGCTATGAGCCAGTTTCTTAATGAGATGCAAGAGACCAAGAAGGGAATTGTGACACCTAAAGAACTCTTTGCTCAGGTCTGTAAAAAGGCAGTGCGGTTTAGAGGCTACCAGCAGCAAGACAGCCAGGAGCTACTTCGCTATTTATTGGATGGCATGAGAGCAGAAGAACACCAAAGAGTGAGTAAAGGAATTCTTAAAGCATTTGGTAATTCTACTGAAAAATTGGATGAAGAACTAAAAAATAAAGTTAAAGATTATGAAAAGAAAAAATCAGTACCAAGTTTTGTGGATCGCATCTTTGGGGGTGAACTAACTAGTACGATCATGTGTGATGAATGCAGAACTGTCTCCTTGGTTCATGAATCTTTCCTTGATTTGTCTCTCCCAGTTTTAGATGATCAGAGTGTTAAGAAAAGTATAAATGATAAAAATCTGAAAAAGACAATGGAGGATGACAGTAAAGACAGCGAGGAAGAGAAAGATAATGATAGTTCCATAAAAGAGAGAAAAGAGATTCCTTCAGGAACAAGCAAGCACTTACAGAAAAAAGCAAAAAAGCAAGCCAAGAAGCAAGCCAAGAACCAAAGAAGGCAACAAAAAATTCAAGGAAAAGTTCTCCATTTAAATGATATTTATATTGTTGACCATCCTAAAGATAATGAATGTGAGGGTGAAATGTCACTTCAGGAAGAAGTGGATATTAAATCCAACCATATTTCACAAGAAGTTGCACATGAAGAATTTTGTGTTAATCAGAAAGATTTGAATGGCCAAGAGAAAGCAATAGAAAGCATAACTGACAATCAAAAATCCATAGAAGTAGATAGAATAAATGTCAACATGGATAATGATCTGGAGGATTTGGCATCTTCTATTGAATGTACTAGGACTTCAGATGGTGCCTATCTGGAGGAAGACAGCAGTGGTGAAGTGGACATTTCCAATGATTTCAAACACCTTAACTTAAATGGTGCTCTTGGACCTGATGAAATAAACACACAGATTTTGAATGATGGTCATATTCCTGCGGCAAAGGTGTATGAAGTTGTAAATGAAGACCCAGAAACTGCTTTTTATACTCTTGCAAACAGGGAAGCTTTCATTACCGATGAGTATTCAATCCAACATTGTTTATATCGGTTCACCCGTAATGAGAAACTTAGAGATGCAAACAGACTGCTTTGTGAAGTATGCACTCGGAGACAGTGTAATGGGCCAAAGGCAAATATAAAAGGTGAAAGGAAGCATGTTTACACTAATGCTAAAAAGCAAATGCTAATTTCTCTTGCTCCGCCTGTTCTCACTCTTCATTTAAAAAGATTTCAGCAGGCTGGTTTTAGCCTACGTAAAGTTAACAAACACATACAGTTTCCAGAAATCTTAGATTTGGCTCCTTTTTGTACTCTTAAGTGTAAGAACGTTGCTGAAGAAAATACAAGAGTGCTATATTCCTTATATGGAGTTGTTGAACATAGTGGCACTATGAGGTCAGGGCATTACACTGCCTACGCCAAGGCAAGAACTGCAAATAATCATCTCTCTAATCTTGTTCTTCATGGTGATATTCCACAAGATTTTGAAATGGAATCAACCAAAGGGCAATGGTTTCACATCAGCGATACACATGTGCAAGCTGTGTCTACAACTGAAGTACTGAACTCACAAGCTTACCTCCTATTTTATGAGAGAATACTGTAA

Related Sequences

XP_004842307.1 Protein

Usp16 PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X2 [Heterocephalus glaber]

Length: 824 aa      View alignments
>XP_004842307.1
MGKKRTKGKTVSVDDSSESSEPICRHIRKGLEEGHLRKALVDVEWNICQGCKMDNKVKDKSEEDTEENPSVWLCLKCGHQGCGRNSQEQHALKHYMIPRSESHCLVLSLDNWSVWCYMCDTEVQYCSSSQLGQVVDYIKKQSTVTSPKLAEKDNGNIELENKKLEKESKNEQEREKKENMAKENLPMNSASQITVKGLSNLGNTCFFNAVMQNLSQTPVLRELLKEVKMSGAIIKIEPPDLALTESLEINLEPPGPLTLAMSQFLNEMQETKKGIVTPKELFAQVCKKAVRFRGYQQQDSQELLRYLLDGMRAEEHQRVSKGILKAFGNSTEKLDEELKNKVKDYEKKKSVPSFVDRIFGGELTSTIMCDECRTVSLVHESFLDLSLPVLDDQSVKKSINDKNLKKTMEDDSKDSEEEKDNDSSIKERKEIPSGTSKHLQKKAKKQAKKQAKNQRRQQKIQGKVLHLNDIYIVDHPKDNECEGEMSLQEEVDIKSNHISQEVAHEEFCVNQKDLNGQEKAIESITDNQKSIEVDRINVNMDNDLEDLASSIECTRTSDGAYLEEDSSGEVDISNDFKHLNLNGALGPDEINTQILNDGHIPAAKVYEVVNEDPETAFYTLANREAFITDEYSIQHCLYRFTRNEKLRDANRLLCEVCTRRQCNGPKANIKGERKHVYTNAKKQMLISLAPPVLTLHLKRFQQAGFSLRKVNKHIQFPEILDLAPFCTLKCKNVAEENTRVLYSLYGVVEHSGTMRSGHYTAYAKARTANNHLSNLVLHGDIPQDFEMESTKGQWFHISDTHVQAVSTTEVLNSQAYLLFYERIL