Details from NCBI annotation

Gene Symbol Gabpa
Gene Name GA binding protein transcription factor, alpha subunit 60kDa, transcript variant X3
Entrez Gene ID 101722967

Database interlinks

Part of NW_004624745.1 (Scaffold)

For more information consult the page for NW_004624745.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

GABPA ENSCPOG00000004704 (Guinea pig)

Gene Details

GA binding protein transcription factor, alpha subunit 60kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004236, Guinea pig)

Protein Percentage 99.34%
CDS Percentage 95.15%
Ka/Ks Ratio 0.01395 (Ka = 0.003, Ks = 0.2159)

GABPA ENSG00000154727 (Human)

Gene Details

GA binding protein transcription factor, alpha subunit 60kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000346886, Human)

Protein Percentage 99.12%
CDS Percentage 94.13%
Ka/Ks Ratio 0.01442 (Ka = 0.004, Ks = 0.2769)

Gabpa ENSMUSG00000008976 (Mouse)

Gene Details

GA repeat binding protein, alpha

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000009120, Mouse)

Protein Percentage 96.92%
CDS Percentage 89.5%
Ka/Ks Ratio 0.02804 (Ka = 0.0146, Ks = 0.5202)

Gabpa ENSRNOG00000001549 (Rat)

Gene Details

GA binding protein transcription factor, alpha subunit (Gabpa), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000002115, Rat)

Protein Percentage 98.68%
CDS Percentage 90.53%
Ka/Ks Ratio 0.01274 (Ka = 0.0062, Ks = 0.4852)

Genome Location

Sequence Coding sequence

Length: 1365 bp    Location: 13788288..13818516   Strand: +
>XM_004842225.1
ATGACTAAAAGAGAAGCAGAAGAGTTGATAGAAATTGAGATTGATGGAACTGAGAAAGCGGAGTGCACAGAAGAAAGCATTGTAGAACAAACTTACACCCCAGCTGAATGTGTAAGCCAGGCCATAGACATCAATGAACCAATTGGCAATTTAAAAAAACTACTAGAACCAAGACTGCAGTGTTCTTTGGATGCTCATGAAATTTGCCTGCAAGATATCCAGCTGGATCCAGAAAGAAGTTTATTTGACCAAGGAGTAAAGACAGATGGAACTGTACAGCTTAGTGTACAGGTAATTTCTTACCAAGGAATTGAGCCGAAGCTAAACATCCTTGAAATTGTGAAAACTGCGGAAACTGTTGAAGTAGTTATTGATCCAGATGCTCATCATGCTGAAGCAGAAGCACATCTTGTGGAAGAAGCTCAAGTGATAACTCTTGATGGCACAAAACACATCACAACCATTTCAGACGAAACTTCAGAGCAAGTGACAAGATGGGCTGCCGCACTGGAAGGTTATAGGAAAGAACAAGAACGCCTCGGGATACCCTATGATCCTATCCAGTGGTCCACAGACCAAGTCCTGCACTGGGTGGTTTGGGTAATGAAGGAGTTCAGCATGACTGATATAGACCTCACCACACTCAACATTTCGGGAAGAGAATTATGTAGTCTCAACCAAGAAGATTTTTTTCAACGAGTGCCTCGGGGAGAAATTCTCTGGAGTCATCTGGAACTTCTTCGAAAATATGTGTTGGCAAGCCAAGAACAACAGATGAATGAAATAGTTACAATCGATCAACCTGTGCAAATTATTCCAGCATCGGTGCAGTCTGCTACACCAACTACCATCAAAGTTATAAATAGTAGTGCAAAAGCAGCTAAAGTACAAAGAGCTCCAAGGATTTCAGGAGAAGATAGAAGCTCTCCTGGGAACAGAACAGGAAACAATGGTCAAATCCAACTATGGCAGTTTTTGTTAGAACTTCTTACTGACAAGGATGCTCGAGACTGTATTTCTTGGGTTGGTGATGAAGGCGAGTTTAAGCTAAATCAGCCTGAACTGGTTGCACAAAAATGGGGACAACGCAAAAATAAGCCTACAATGAACTATGAGAAGCTCAGTCGTGCTTTAAGGTATTATTACGATGGGGACATGATTTGTAAGGTTCAAGGCAAGAGATTTGTGTACAAGTTTGTCTGTGACTTGAAGACTCTTATTGGATACAGTGCTGCAGAACTCAACCGCTTGGTCACAGAATGTGAACAGAAGAAACTTGCAAAGATGCAGCTGCATGGAATTGCCCAGCCCGTCACGGCAGTAGCCCTGGCCACTGCTTCTCTGCAAACTGAAAAGGATAATTGA

Related Sequences

XP_004842282.1 Protein

Gabpa PREDICTED: GA-binding protein alpha chain isoform X3 [Heterocephalus glaber]

Length: 454 aa      View alignments
>XP_004842282.1
MTKREAEELIEIEIDGTEKAECTEESIVEQTYTPAECVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPERSLFDQGVKTDGTVQLSVQVISYQGIEPKLNILEIVKTAETVEVVIDPDAHHAEAEAHLVEEAQVITLDGTKHITTISDETSEQVTRWAAALEGYRKEQERLGIPYDPIQWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQRVPRGEILWSHLELLRKYVLASQEQQMNEIVTIDQPVQIIPASVQSATPTTIKVINSSAKAAKVQRAPRISGEDRSSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTECEQKKLAKMQLHGIAQPVTAVALATASLQTEKDN