Details from NCBI annotation

Gene Symbol Sdcbp
Gene Name syndecan binding protein (syntenin), transcript variant X2
Entrez Gene ID 101700500

Database interlinks

Part of NW_004624744.1 (Scaffold)

For more information consult the page for NW_004624744.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SDCBP ENSCPOG00000013616 (Guinea pig)

Gene Details

syndecan binding protein (syntenin)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012258, Guinea pig)

Protein Percentage 94.58%
CDS Percentage 92.09%
Ka/Ks Ratio 0.09443 (Ka = 0.0262, Ks = 0.2772)

SDCBP ENSG00000137575 (Human)

Gene Details

syndecan binding protein (syntenin)

External Links

Gene Match (Ensembl Protein ID: ENSP00000260130, Human)

Protein Percentage 96.27%
CDS Percentage 92.54%
Ka/Ks Ratio 0.06111 (Ka = 0.0187, Ks = 0.3061)

Sdcbp ENSMUSG00000028249 (Mouse)

Gene Details

syndecan binding protein

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029912, Mouse)

Protein Percentage 90.51%
CDS Percentage 87.01%
Ka/Ks Ratio 0.0932 (Ka = 0.05, Ks = 0.5362)

Sdcbp ENSRNOG00000009683 (Rat)

Gene Details

syndecan binding protein (Sdcbp), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013563, Rat)

Protein Percentage 89.83%
CDS Percentage 86.67%
Ka/Ks Ratio 0.09503 (Ka = 0.0519, Ks = 0.5457)

Genome Location

Sequence Coding sequence

Length: 888 bp    Location: 33558943..33524111   Strand: -
>XM_004842149.1
ATGTCTCTCTACCCATCGCTTGAAGATTTGAAGGTAGACAAAGTAATTCAGGCTCAAACTGCCTTTTCTGCAAACCCTGCCAACCCAGCAATTTTGTCAGAAGCTTCTGCCTCCATCTCACAAGATGGAAATCTCTATCCCAAACTGTATCCTGAGCTTTCTCAATACATGGGCCTGAGTTTAAATGAAGAAGAAGTACGTGCCATGGTCTCTGGAGCACCAACTCAGGGGCAATTGGTAGCAAGACCTTCCAGTATGAACTACATGGTGGCCCCAGTAACAGGCAATGACGTTGGAATTCGTAGAGCAGAAATAAAACAAGGGATTCGTGAAGTCATTTTGTGTAAGGATCAAGATGGAAAAATTGGGCTCAGGCTTAAATCAGTAGATAATGGTATATTTGTTCAGCTAGTTCAGGCCAATTCTCCAGCTTCATTGGTTGGTCTGAGATTTGGGGATCAGGTCCTCCAGATCAATGGTGAGAACTGTGCAGGCTGGAGTTCTGATAAAGCACACAAGGTGCTCAAACAAGCTTTTGGAGAGAAGATTACCATGACCATTCGTGACAGGCCCTTTGAGCGGACAATTACCATGCACAAGGATAGTACTGGACATGTTGGTTTTATCTTTAAAAATGGAAAAATAACATCCATAGTAAAAGATAGTTCTGCTGCCAGAAATGGTCTTCCCACTGAACATAACATCTGTGAAATCAACGGACAGAATGTCATTGGATTGAAGGATTCTCAAATAGCAGACATACTTTCAACATCTGGGACTGTAGTTACCATAACAATCATGCCTGCTTTTATCTTTGAACATATTATTAAACGGATGGCACCAAGCATTATGAAAAACCTGATGGATCACACCATTCCTGAGGTTTAA

Related Sequences

XP_004842206.1 Protein

Sdcbp PREDICTED: syntenin-1 isoform X2 [Heterocephalus glaber]

Length: 295 aa      View alignments
>XP_004842206.1
MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASASISQDGNLYPKLYPELSQYMGLSLNEEEVRAMVSGAPTQGQLVARPSSMNYMVAPVTGNDVGIRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLPTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKNLMDHTIPEV