Sequence details NCBI ID: XM_004842054.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sbspon
Gene Name somatomedin B and thrombospondin, type 1 domain containing
Entrez Gene ID 101725490

Database interlinks

Part of NW_004624744.1 (Scaffold)

For more information consult the page for NW_004624744.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SBSPON ENSCPOG00000010933 (Guinea pig)

Gene Details

somatomedin B and thrombospondin, type 1 domain containing

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009824, Guinea pig)

Protein Percentage 87.88%
CDS Percentage 90.03%
Ka/Ks Ratio 0.28921 (Ka = 0.0695, Ks = 0.2404)

SBSPON ENSG00000164764 (Human)

Gene Details

somatomedin B and thrombospondin, type 1 domain containing

External Links

Gene Match (Ensembl Protein ID: ENSP00000297354, Human)

Protein Percentage 87.5%
CDS Percentage 88.89%
Ka/Ks Ratio 0.25012 (Ka = 0.0712, Ks = 0.2847)

Sbspon ENSMUSG00000032719 (Mouse)

Gene Details

somatomedin B and thrombospondin, type 1 domain containing

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000047730, Mouse)

Protein Percentage 82.95%
CDS Percentage 83.08%
Ka/Ks Ratio 0.18529 (Ka = 0.1012, Ks = 0.5461)

Sbspon ENSRNOG00000007258 (Rat)

Gene Details

Protein Sbspon; Similar to RPE-spondin (Predicted)

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009530, Rat)

Protein Percentage 81.82%
CDS Percentage 82.45%
Ka/Ks Ratio 0.17731 (Ka = 0.1046, Ks = 0.59)

Genome Location

Sequence Coding sequence

Length: 795 bp    Location: 18086904..18108862   Strand: +
Raw sequence   
>XM_004842054.1
ATGTGGCACCTGTGGCTGGCGCTGTGCGCGCTGGCGCGGCTGTGGCCCGGGGTCCTGGCCAGCTGCGCCAAAGCCGGGCGCTGCTGCCCCGGCCGGGACCCCGCCTGCTTCGCCCGCGGCTGGAGGCTGGACCGGGTCTACGGGACGTGCTTCTGCGACCAAGCCTGTCGCCTCACCGGGGACTGCTGCTTCGACTATGCCAGGGCGTGTCCAGCTCGCCCTTGCTTCGTTGGGGAGTGGAGCGACTGGAGTCCCTGTGCAGACCAGTGCAAGCCAGCGACCCGCGTGCGGAGGCGCTCGGTGCGGCAGGAGCCTCGGAATGGCGGGGCGCCCTGCCCACCGCTGGAGGAGCGAGCCGGCTGCCTGGAGTACGCGAGGACGCTTGGCCAGGGCTGCGGGGACACCTTCGTCCCTGCCTTTATAACTACCTCTGCATTCAACAAGGAAAGAACAAGACAAGCTACATCTCCACGGTGGTCTAAAATCACAGAAGAGCCTGGATACTGTGTGGAGTTCAAGACCAAGTCCCTGACTCCCCACTGTGCTTTGGAAAACCAGCCCCTGACTCGGTGGATGCAGTATCTCCGAGAGGGGTACACAGTGTGTGTGGATTGTCAGCCTCCAGCTATGAATGCTGAGAACCTTCGCTGCTCTGGAGATGGTCTGGACTCTGATGGAAATCAAACCCTCCATTGGCAAGCAATTGGCAATCCTCGATGTCAAGGAACCTGGAAAAAAGTTCGGCGAGTGGACCAGTGTTCTTGTCCAGCTGTTCACAGTTTCATTTTTATATAG

Related Sequences

XP_004842111.1 Protein

Sbspon PREDICTED: somatomedin-B and thrombospondin type-1 domain-containing protein [Heterocephalus glaber]

Length: 264 aa      View alignments
>XP_004842111.1
MWHLWLALCALARLWPGVLASCAKAGRCCPGRDPACFARGWRLDRVYGTCFCDQACRLTGDCCFDYARACPARPCFVGEWSDWSPCADQCKPATRVRRRSVRQEPRNGGAPCPPLEERAGCLEYARTLGQGCGDTFVPAFITTSAFNKERTRQATSPRWSKITEEPGYCVEFKTKSLTPHCALENQPLTRWMQYLREGYTVCVDCQPPAMNAENLRCSGDGLDSDGNQTLHWQAIGNPRCQGTWKKVRRVDQCSCPAVHSFIFI