Sequence details NCBI ID: XM_004841820.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ctnna1
Gene Name catenin (cadherin-associated protein), alpha 1, 102kDa, transcript variant X1
Entrez Gene ID 101715878

Database interlinks

Part of NW_004624743.1 (Scaffold)

For more information consult the page for NW_004624743.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CTNNA1 ENSCPOG00000013390 (Guinea pig)

Gene Details

catenin (cadherin-associated protein), alpha 1, 102kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012052, Guinea pig)

Protein Percentage 99.45%
CDS Percentage 95.54%
Ka/Ks Ratio 0.01479 (Ka = 0.0026, Ks = 0.176)

CTNNA1 ENSG00000044115 (Human)

Gene Details

catenin (cadherin-associated protein), alpha 1, 102kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000304669, Human)

Protein Percentage 99.45%
CDS Percentage 93.23%
Ka/Ks Ratio 0.01061 (Ka = 0.0031, Ks = 0.2944)

Ctnna1 ENSMUSG00000037815 (Mouse)

Gene Details

catenin (cadherin associated protein), alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000049007, Mouse)

Protein Percentage 99.12%
CDS Percentage 90.73%
Ka/Ks Ratio 0.00879 (Ka = 0.0041, Ks = 0.4665)

Ctnna1 ENSRNOG00000005796 (Rat)

Gene Details

catenin (cadherin-associated protein), alpha 1, 102kDa (Ctnna1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008041, Rat)

Protein Percentage 99.34%
CDS Percentage 89.4%
Ka/Ks Ratio 0.00549 (Ka = 0.0031, Ks = 0.5665)

Genome Location

Sequence Coding sequence

Length: 2721 bp    Location: 31558656..31700340   Strand: +
Raw sequence   
>XM_004841820.1
ATGACTGCTGTCCACACTGGCAACATAAACTTCAGATGGGATCCCAAAAGTCTAGAGATCAGGACTCTGGCAGTTGAAAGACTGTTGGAACCTCTTGTTACACAGGTTACAACCTTGGTCAATACCAATAGCAAGGGACCCTCTAATAAAAAGAGAGGTCGTTCTAAGAAGGCCCATGTTTTGGCTGCATCTGTTGAACAAGCAACTGAGAATTTTTTGGAGAAGGGGGATAAAATTGCAAAGGAGAGTCAGTTTCTCAAGGAGGAGCTTGTGGCTGCTGTAGAAGATGTTCGAAAACAAGGAGATTTGATGAAGAGTGCAGCGGGAGAATTTGCAGATGATCCCTGCTCGTCTGTGAAGCGAGGCAACATGGTTCGGGCAGCTCGAGCCTTACTCTCCGCTGTTACCCGGCTGCTGATTTTGGCTGACATGGCAGATGTCTACAAATTACTTGTTCAACTGAAAGTTGTGGAAGATGGTATCTTGAAGCTGAGGAATGCTGGCAATGAACAAGACTTGGGAGTACAGTACAAAGCCCTGAAACCTGAAGTGGATAAGCTGAACATTATGGCAGCTAAAAGACAACAGGAATTGAAAGATGTGGGCCATCGTGATCAGATGGCTGCAGCCAGAGGAATCCTGCAGAAAAACGTTCCAATCCTGTATACTGCATCTCAGGCTTGCTTACAACACCCTGATGTCGCAGCCTATAAGGCCAACCGGGATCTGATATACAAGCAGCTGCAGCAGGCAGTCACAGGCATTTCCAATGCTGCCCAGGCAACCGCGTCAGATGATGCTTCCCAGCACCAGGGTGGAGGAGGAGGAGAACTGGCATATGCTCTCAATAATTTTGATAAACAAATCATTGTAGACCCTCTGAGCTTCAGTGAGGAGCGCTTTAGGCCATCCCTAGAGGAACGCCTGGAAAGCATCATTAGTGGTGCTGCACTCATGGCTGACTCATCCTGCACGCGTGATGACCGCCGTGAGCGAATTGTGGCAGAGTGCAATGCTGTCCGCCAGGCCCTGCAGGATCTGCTCTCAGAGTACATGGGCAATGCTGGACGTAAAGAAAGAAGTGATGCACTCAATTCTGCAATAGATAAAATGACAAAGAAGACCAGGGACTTGCGTAGACAGCTCCGCAAAGCTGTCATGGACCACGTTTCCGATTCCTTCCTGGAAACCAACGTTCCACTTTTAGTATTGATTGAAGCTGCAAAGAATGGAAATGAGAAAGAAGTTAAGGAATATGCCCAAGTTTTTCGTGAACATGCCAACAAATTGATTGAGGTTGCCAACTTGGCCTGTTCCATCTCAAACAATGAAGAAGGTGTAAAGCTTGTTCGAATGTCCGCAAGCCAGTTAGAAGCCCTCTGTCCTCAGGTTATTAATGCTGCATTGGCTTTAGCAGCAAAACCTCAGAGTAAATTGGCTCAAGAGAATATGGATCTTTTTAAAGAACAGTGGGAAAAACAAGTCCGTGTTCTCACAGATGCTGTTGATGATATTACATCCATTGATGACTTCTTGGCTGTCTCAGAGAATCATATTTTGGAAGATGTGAACAAATGTGTCATTGCTCTCCAAGAGAAAGATGTGGATGGGCTGGACCGCACAGCTGGTGCAATTAGAGGCCGAGCAGCCCGGGTCATTCATGTAGTAACCTCAGAGATGGACAACTATGAGCCCGGAGTCTACACAGAGAAAGTTCTGGAAGCTACCAAGCTGCTTTCCAACACAGTCATGCCTCGTTTCACCGAGCAAGTGGAAGCAGCCGTGGAAGCCCTCAGCTCAGATCCTGCCCAGCCCATGGATGAGAATGAGTTTATTGATGCCTCCCGCCTCGTGTACGATGGCATCCGGGACATCAGGAAAGCGGTGCTGATGATAAGGACCCCTGAGGAACTGGATGACTCCGACTTTGAGACGGAAGACTTTGATGTCAGAAGTAGGACAAGTGTCCAGACAGAAGATGACCAGCTGATAGCTGGCCAGAGTGCCCGGGCGATCATGGCTCAGCTTCCCCAGGAGCAAAAAGCAAAGATTGCGGAACAAGTGGCCAGCTTCCAAGAAGAAAAGAGCAAGCTGGATGCTGAAGTGTCCAAATGGGATGATAGTGGCAACGACATCATCGTGCTGGCCAAGCAGATGTGCATGATCATGATGGAGATGACAGACTTCACCCGAGGTAAAGGGCCACTCAAAAACACATCAGATGTGATCAGTGCTGCCAAGAAAATTGCTGAGGCAGGATCAAGGATGGATAAGCTTGGGCGAACCATTGCAGACCATTGCCCGGACTCAGCCTGCAAGCAGGACCTGCTGGCATATCTGCAGCGCATAGCCCTCTACTGCCACCAGCTCAACATCTGCAGCAAGGTGAAGGCTGAGGTGCAGAACCTTGGCGGAGAGCTCGTTGTCTCCGGGGTGGACAGCGCCATGTCCCTGATTCAGGCAGCCAAGAACTTGATGAATGCCGTAGTGCAGACAGTGAAGGCATCCTACGTAGCCTCTACCAAATACCAAAAGTCTCAGGGTATGGCTTCCCTCAACCTTCCTGCCGTGTCATGGAAGATGAAGGCGCCTGAGAAGAAGCCATTGGTGAAGAGAGAGAAGCAGGATGAGACACAGACCAAGATTAAGCGGGCATCACAGAAGAAGCATGTCAACCCTGTGCAGGCGCTCAGTGAGTTCAAAGCCATGGAAAGCATTTGA

Related Sequences

XP_004841877.1 Protein

Ctnna1 PREDICTED: catenin alpha-1 isoform X1 [Heterocephalus glaber]

Length: 906 aa      View alignments
>XP_004841877.1
MTAVHTGNINFRWDPKSLEIRTLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASVEQATENFLEKGDKIAKESQFLKEELVAAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGVQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQATASDDASQHQGGGGGELAYALNNFDKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIRTPEELDDSDFETEDFDVRSRTSVQTEDDQLIAGQSARAIMAQLPQEQKAKIAEQVASFQEEKSKLDAEVSKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDVISAAKKIAEAGSRMDKLGRTIADHCPDSACKQDLLAYLQRIALYCHQLNICSKVKAEVQNLGGELVVSGVDSAMSLIQAAKNLMNAVVQTVKASYVASTKYQKSQGMASLNLPAVSWKMKAPEKKPLVKREKQDETQTKIKRASQKKHVNPVQALSEFKAMESI