Sequence details NCBI ID: XM_004841725.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lix1
Gene Name Lix1 homolog (chicken)
Entrez Gene ID 101710285

Database interlinks

Part of NW_004624743.1 (Scaffold)

For more information consult the page for NW_004624743.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LIX1 ENSCPOG00000022425 (Guinea pig)

Gene Details

Lix1 homolog (chicken)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019192, Guinea pig)

Protein Percentage 98.23%
CDS Percentage 94.68%
Ka/Ks Ratio 0.03788 (Ka = 0.0081, Ks = 0.2141)

LIX1 ENSG00000145721 (Human)

Gene Details

Lix1 homolog (chicken)

External Links

Gene Match (Ensembl Protein ID: ENSP00000274382, Human)

Protein Percentage 96.81%
CDS Percentage 92.08%
Ka/Ks Ratio 0.04809 (Ka = 0.0151, Ks = 0.3134)

Lix1 ENSMUSG00000047786 (Mouse)

Gene Details

limb expression 1 homolog (chicken)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000111239, Mouse)

Protein Percentage 96.81%
CDS Percentage 89.48%
Ka/Ks Ratio 0.03306 (Ka = 0.0165, Ks = 0.498)

Lix1 ENSRNOG00000012988 (Rat)

Gene Details

Lix1 homolog (chicken) (Lix1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000017442, Rat)

Protein Percentage 96.1%
CDS Percentage 88.3%
Ka/Ks Ratio 0.0358 (Ka = 0.02, Ks = 0.5591)

Genome Location

Sequence Coding sequence

Length: 849 bp    Location: 15794540..15744962   Strand: -
Raw sequence   
>XM_004841725.1
ATGGACAGAACCTTGGAATCTCTGAGACACATCATTGCCCAAGTCTTGCCTCACAGAGACCCGGCTGTAGTCTTCAAAGACTTGAACGTTGTATCAATGTTACAGGAATTCTGGGAAAGCAAGCAGCAGCAGAAGGCCACGTTCCCAAGTGAAGGCGTGGTGGTCTATGAGTCTCTGCCTTCTTCAGGGCCCCCCTTTGTGAGTTATGTGACTCTCCCAGGAGGGAGCTGCTTTGGCAATTTTCAGTGCTGCTTAAGTAGAGCTGAGGCCAGACGGGATGCAGCCAAAGTGGCCCTAATCAACTCCCTCTTCAATGAACTCCCCTCACGCAGGATCACCAAGGAATTCATTATGGAAAGTGTTCAGGAAGCGGTGGCCTCCACCAGCGGCACTTTAGATGATGCGGATGATCCCAGCACGAGCATCGGCGCCTATCACTACATGCTGGAGTCAAATATGGGGAAGACCATGCTGGAGTTTCAGGAGCTGATGACTATTTTCCAGCTACTGCACTGGAATGGAAGTCTAAAAGCTCTCCGTGAAACAAAGTGTTCTCGACAGGAAGTCATCTCCTATTATTCCCAGTATTCCCTGGATGAAAAGATGCGCAGCCACATGGCCCTGGACTGGATCATGAAGGAGCGGGAATCACCTGGAATTCTCTCCCAAGAGCTACGAATGGCCCTGAGGCAGTTGGAGGAAGCCAGGAAAGCAGGCCAAGAACTGCGATTTTACAAAGAAAAGAAAGAAATTCTGAGCTTGGCCCTGACTCAGATCTACAGTGACCCAGACCCTTCTTCGCCCAGTGACGACCAGCTGAGCCTTACGGCCCTGTGTGGCTATCACTAA

Related Sequences

XP_004841782.1 Protein

Lix1 PREDICTED: protein limb expression 1 homolog [Heterocephalus glaber]

Length: 282 aa      View alignments
>XP_004841782.1
MDRTLESLRHIIAQVLPHRDPAVVFKDLNVVSMLQEFWESKQQQKATFPSEGVVVYESLPSSGPPFVSYVTLPGGSCFGNFQCCLSRAEARRDAAKVALINSLFNELPSRRITKEFIMESVQEAVASTSGTLDDADDPSTSIGAYHYMLESNMGKTMLEFQELMTIFQLLHWNGSLKALRETKCSRQEVISYYSQYSLDEKMRSHMALDWIMKERESPGILSQELRMALRQLEEARKAGQELRFYKEKKEILSLALTQIYSDPDPSSPSDDQLSLTALCGYH