Sequence details NCBI ID: XM_004841494.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Wdr78
Gene Name WD repeat domain 78, transcript variant X2
Entrez Gene ID 101701327

Database interlinks

Part of NW_004624742.1 (Scaffold)

For more information consult the page for NW_004624742.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

WDR78 ENSCPOG00000014157 (Guinea pig)

Gene Details

WD repeat domain 78

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012754, Guinea pig)

Protein Percentage 84.29%
CDS Percentage 83.4%
Ka/Ks Ratio 0.15623 (Ka = 0.0934, Ks = 0.5977)

WDR78 ENSG00000152763 (Human)

Gene Details

WD repeat domain 78

External Links

Gene Match (Ensembl Protein ID: ENSP00000360065, Human)

Protein Percentage 81.44%
CDS Percentage 84.97%
Ka/Ks Ratio 0.24665 (Ka = 0.1088, Ks = 0.441)

Wdr78 ENSMUSG00000035126 (Mouse)

Gene Details

WD repeat domain 78

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000102481, Mouse)

Protein Percentage 75.53%
CDS Percentage 78.46%
Ka/Ks Ratio 0.18769 (Ka = 0.1477, Ks = 0.7871)

Wdr78 ENSRNOG00000006999 (Rat)

Gene Details

WD repeat domain 78 (Wdr78), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000048851, Rat)

Protein Percentage 76.64%
CDS Percentage 78.28%
Ka/Ks Ratio 0.18336 (Ka = 0.1492, Ks = 0.8139)

Genome Location

Sequence Coding sequence

Length: 2421 bp    Location: 28100852..28181377   Strand: +
Raw sequence   
>XM_004841494.1
ATGTCCGGCTCTCCGAGCAGCATCCGCAAGTCTCCGAGCCACTTGAGTAGTACCTTACAATCAAAGAAGTCTATTAGCTTTACTGAAAAAGGAAAAGAAACTTTGAAGAAAGGATATGCTGGTGCAACTCAAAGCAGAATGAGTGTGTCAAGAAACTTATTTATTTTACCTGAGATGAAAATGACAGAAAAAATGAATATTTCCAGTGGCAAGATAGTACAGGTGCTGGATAAGAATGGCGTTGATGTTACTCCCAGACCTCTTTACTGCCCAGATCCCCATGCAGCAAAGCCAAATAAACTACTGTCATCTCAAGAAGGCTCACTTGGGTCAGATTTTATCGCCTCCTATAGCATGTATCAGAACACAATAAACCCCAGTGTGATGGGGCAGTTTACGAGGTCAGTTTTAGGCAGCAGTACAGTTTCTAAGTCAAGTATATCAACAACTGAGTCAATAGCAGGAGACTTAGAAGAACCATATAAAGGAGGAAAATTGGCTAGTTTTACAGACCTACGAGTTATGAGGGCAGCCCCTGAGACAGTCCTAACAAAAGAAGACCTGGAGAAGAATGTCGAGATCCTACTCACAGAGACAGACACACTGCGGTTTTTTGACCTGCCGACAGTGATGGTCTCTGTAGAAAGTGAAGACGCAGAGAAAGTAACCCAGAGAAATAAGAAATATGAAATCCTTTGTAAAAATAGATTAGGCAATGATTTATATGTTGAACGGATGATGCAGACTTTTAATGGAGCACCAAAAAATAAAGATGTACAGTGTGATAAAATCATAATGGAAGATCAAGGCATAATGGCCACGACCTGGGATCTGTATGATTCTTACAGTGCTCTAGAACTTTCATCTTTAGCAGTGAAACGATCTGCAATTGAATCAAGTAGTAAAGCAAGTGTCCTTCCTAGGGAACGGGACCAAAGACTCCTGGGAAGCACTACGGACAAAAATAGTGAAGCTAGTTCTCTAATGGATATAGAAAATGTAATTCTGACTAAAGTCCATGAGGATGAAGAAGACCACGCAGATGCAATATTAAAATCTGACAAATTTCTTCAGGACTTATTTTTCATGGAACGAGTTATAATGGAAAATATATTTCAGCCAAAGCTTGCAGCTTACCGCCAGCTTCCTGTTTTAAAAGAACCTGAGCCTGAAGAGCCCAAAGAGTTTTTAGAAGGTGAAAAAGTTGGAGAAGTGGAAGAAGAGGTTAAGAAGGAAGAGGAAGAAGAAATAGAAATAAATGCAGAACAATCAACAATACCAGCCAATTTGGAACGACTTTGGTCTTTTTCCTGTGACTTAACCAAAGGTCTTAATGTGAGCAGCCTTGCCTGGAATAAAATAAATCCAGATCTTCTGGCTGTTGGGTATGGACACTTCGGATTTAAGGAGCAAAAAAGAGGATTGGCTTGCTGCTGGTCGATAAAGAATCCCATGTGGCCAGAGCGTGTTTACCCAAGTCCATATGGAGTCACAGCTGTGGATTTCTCCATTGGAACACCTAACTTGTTAGCAGTTGGCTATTACAATGGCACAATCATGATTTATAACGTGCAAAGCAGCAATAATGTTCCGGTTCTGGATAGCAGTGAATCACCTCAAAAACATTTGGGACCTGTTTGGCAACTGCAGTGGATAGAACAAGACCGAGGAACAACGGGTGATGACAAAAGAGAATTCCTAGTTTCCATATCAGCAGATGGAAGAATCTCCAAATGGGTTATACGGAAAGGACTGTACTGCCATGATTTGATGCGGTTAAAACGAACTACGGCTGGCAGCAACGTGAAAGGAGGGGACAAGGAAAAGAAAGGAGAAGCTTTACTATCACGACAGGCCCCTGGCATGTGTTTCGCTTTTCACCCCAAGGACACAAATATCTATTTGACTGGCACTGAAGAAGGTCATATTCACAAATGTTCTTGTTCCTATAATGAACAATACTTAGAAACCTACAGAGGACATAAGGGCCCAGTGTATAAAGTAACATGGAATCCATTTTGTCCTGACATATTCTTAAGCTGTTCAGCAGACTGGGGTGTCATAATATGGCAACAGGAGAATCTCCAGCCCTTGCTGAGTTTTTATCCAACGACTCATGTTGTGTACGACATCACCTGGTCTCCAAAGTCATCCTATATATTTGCGGCTGCAAATGAGAGCAGAGTGGAGATTTGGGACCTCCACGTCAGCATTTTGGACCCTCTGATCGTAAATGTCGCTAACCCTGGAATCAAGTTCACAACAGTTCTCTTCGCCAAGCACACGGATTGCCTACTGGTGGGAGATAGTGATGGACAGGTGGCTGTGTATGAGCTGAGAAATATGCCTTCTGCTTCAGATTCTGGCCGGGGAGATATAATAAATACTTTGCTTGGGTCCAAGTCAAACCAACCAGGATAA

Related Sequences

XP_004841551.1 Protein

Wdr78 PREDICTED: WD repeat-containing protein 78 isoform X2 [Heterocephalus glaber]

Length: 806 aa      View alignments
>XP_004841551.1
MSGSPSSIRKSPSHLSSTLQSKKSISFTEKGKETLKKGYAGATQSRMSVSRNLFILPEMKMTEKMNISSGKIVQVLDKNGVDVTPRPLYCPDPHAAKPNKLLSSQEGSLGSDFIASYSMYQNTINPSVMGQFTRSVLGSSTVSKSSISTTESIAGDLEEPYKGGKLASFTDLRVMRAAPETVLTKEDLEKNVEILLTETDTLRFFDLPTVMVSVESEDAEKVTQRNKKYEILCKNRLGNDLYVERMMQTFNGAPKNKDVQCDKIIMEDQGIMATTWDLYDSYSALELSSLAVKRSAIESSSKASVLPRERDQRLLGSTTDKNSEASSLMDIENVILTKVHEDEEDHADAILKSDKFLQDLFFMERVIMENIFQPKLAAYRQLPVLKEPEPEEPKEFLEGEKVGEVEEEVKKEEEEEIEINAEQSTIPANLERLWSFSCDLTKGLNVSSLAWNKINPDLLAVGYGHFGFKEQKRGLACCWSIKNPMWPERVYPSPYGVTAVDFSIGTPNLLAVGYYNGTIMIYNVQSSNNVPVLDSSESPQKHLGPVWQLQWIEQDRGTTGDDKREFLVSISADGRISKWVIRKGLYCHDLMRLKRTTAGSNVKGGDKEKKGEALLSRQAPGMCFAFHPKDTNIYLTGTEEGHIHKCSCSYNEQYLETYRGHKGPVYKVTWNPFCPDIFLSCSADWGVIIWQQENLQPLLSFYPTTHVVYDITWSPKSSYIFAAANESRVEIWDLHVSILDPLIVNVANPGIKFTTVLFAKHTDCLLVGDSDGQVAVYELRNMPSASDSGRGDIINTLLGSKSNQPG