Sequence details NCBI ID: XM_004841305.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lrrc8c
Gene Name leucine rich repeat containing 8 family, member C, transcript variant X2
Entrez Gene ID 101726711

Database interlinks

Part of NW_004624742.1 (Scaffold)

For more information consult the page for NW_004624742.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRRC8C ENSCPOG00000008035 (Guinea pig)

Gene Details

leucine rich repeat containing 8 family, member C

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007230, Guinea pig)

Protein Percentage 99.63%
CDS Percentage 95.64%
Ka/Ks Ratio 0.01186 (Ka = 0.0018, Ks = 0.1551)

LRRC8C ENSG00000171488 (Human)

Gene Details

leucine rich repeat containing 8 family, member C

External Links

Gene Match (Ensembl Protein ID: ENSP00000359483, Human)

Protein Percentage 98.38%
CDS Percentage 92.9%
Ka/Ks Ratio 0.02946 (Ka = 0.0083, Ks = 0.2815)

Lrrc8c ENSMUSG00000054720 (Mouse)

Gene Details

leucine rich repeat containing 8 family, member C

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000066015, Mouse)

Protein Percentage 97.26%
CDS Percentage 86.67%
Ka/Ks Ratio 0.01974 (Ka = 0.0148, Ks = 0.7499)

Lrrc8c ENSRNOG00000002122 (Rat)

Gene Details

leucine rich repeat containing 8 family, member C (Lrrc8c), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000002896, Rat)

Protein Percentage 97.63%
CDS Percentage 85.68%
Ka/Ks Ratio 0.01293 (Ka = 0.012, Ks = 0.9267)

Genome Location

Sequence Coding sequence

Length: 2412 bp    Location: 8096611..8013840   Strand: -
Raw sequence   
>XM_004841305.1
ATGATTCCGGTGACAGAATTCCGGCAGTTCTCTGAGCAGCAGCCTGCCTTCCGGGTGCTGAAACCATGGTGGGATGTGTTTACGGATTACCTCTCTGTGGCCATGCTGATGATCGGTGTGTTCGGATGCACTTTACAGGTCATGCAAGACAAGATAATCTGCCTTCCAAAAAGAGTGCAGCCTGCTCAGAACCACTCATCTGTTTCAAATGTCTCTCAAGCAGTTGCCAGTACCACCCCGTTGCCTCTACCCAAACCATCTCCTACCAACCCTGCCCCTGTGGAAATGAAAGGATTGAAAACAGATCTGGATCTTCAGCAGTACAGTTTCATAAACCAGATGTGTTATGAACGAGCCCTCCACTGGTATGCCAAGTATTTCCCCTACCTTGTGCTCATCCATACTTTGGTCTTCATGCTCTGCAGTAACTTTTGGTTCAAATTCCCTGGATCCAGCTCCAAAATAGAACATTTCATCTCCATCCTGGGAAAATGTTTTGACTCTCCCTGGACAACACGGGCTTTATCTGAAGTATCTGGGGAGGACTCAGAAGAAAAGGACAACAGGAAGAACAATATGAACAGGTCCAATACCACTCAGTCTGGTCCAGAGGGCAGCCTGGTCAACTCTCAGTCTCTGAAGTCAATTCCTGAGAAGTTTGTGGTTGACAAATCTACAGCAGGGGCTCTAGATAAAAAGGAAGGTGAGCAAGCAAAAGCCTTATTTGAGAAGGTAAAGAAGTTCAGGCTACATGTGGAAGAAGGTGATATACTCTATGCTATGTATGTTCGCCAGACTGTACTCAAGGTTATCAAATTCCTCATCATCATTGCATATAATAGTGCTCTGGTTTCCAAAGTCCAATTTACAGTGGATTGTAATGTTGACATTCAGGACATGACTGGATATAAAAACTTTTCTTGCAATCATACCATGGCACACTTGTTCTCAAAACTCTCCTTTTGCTACTTGTGCTTTGTAAGTATCTATGGATTGACATGCCTTTATACCTTATATTGGCTATTCTACCGCTCTCTAAGGGAATATTCTTTTGAGTATGTCCGGCAGGAGACTGGAATCGATGATATTCCAGATGTGAAAAATGACTTTGCTTTTATGCTTCATATGATCGATCAGTATGATCCTCTTTATTCCAAGAGATTTGCAGTGTTCCTGTCTGAAGTCAGTGAAAACAAACTAAAACAGCTAAACTTAAATAATGAGTGGACTCCTGATAAACTGAGGCAGAAACTGCAGACAAATGCCCATAATAGACTGGAATTGCCTCTAATCATGCTTTCTGGCCTTCCAGACACTGTTTTTGAAATCACAGAGTTGCAATCTCTAAAACTTGAAATCATTAAGAATGTAATGATACCAGCCACCATTGCACAGCTAGACAATCTCCAGGAGCTCTCTCTACACCAGTGCTCTGTCAAAATCCACAGTGCAGCTCTCTCTTTCCTGAAGGAAAACCTCAAAGTCCTGAGTGTCAAGTTTGATGACATGAGGGAGCTGCCCCCATGGATGTATGGGCTGCGGAATCTGGAAGAGCTTTACCTAGTTGGCTCTCTAAGTCATGATATTTCCAAAAATGTCACCCTCGAGTCTCTGCGGGATCTCAAAAGCCTTAAAATTCTCTCTATCAAAAGCAATGTTTCCAAAATCCCTCAGGCGGTGGTGGATGTTGCCAGCCATCTCCAGAAGATGTGCATACATAACGATGGCACCAAGCTGGTGATGATCAACAATTTAAAGAAGATGACCAATCTGACAGAGCTGGAACTGGTCCACTGTGATCTGGAGCGCATTCCTCATGCTGTGTTCAGCCTGCTTAGCCTCCAGGAACTGGACCTGAAAGAAAACAACCTGAAATCTATAGAAGAAATCGTGAGCTTCCAGCATTTGAGGAAGTTGACAGTGCTAAAACTGTGGCATAACAGCATCACCTACATCCCAGAGCATATAAAGAAACTCACCAGCCTGGAACGACTGTCCTTTAGTCACAATAAAATAGAGGTGCTGCCTTCCCACCTCTTCCTATGCAACAAAATCCGATACTTGGATTTATCCTACAATGATATCCGATTCATCCCACCTGAAGTCGGAGTTTTACAAAGTTTACAGTATTTTTCCATCACTTGTAACAAAGTGGAAAGCCTTCCAGATGAACTTTACTTCTGCAAGAAACTTAAGACTTTGAAGATTGGAAAAAATAGTCTATCAGTACTCTCACCGAAAATTGGAAATTTACTATTTCTTTCCTACTTGGATGTCAAAGGGAATCACTTTGAAATCCTCCCTCCTGAACTGGGTGACTGCCGGGCTCTGAAGCGAGCTGGTTTAGTTGTAGAAGACACTCTCTTTGAAACTTTGCCCTCTGATGTCCGGGAGCAAATGAAAGCAGAATAA

Related Sequences

XP_004841362.1 Protein

Lrrc8c PREDICTED: leucine-rich repeat-containing protein 8C isoform X2 [Heterocephalus glaber]

Length: 803 aa      View alignments
>XP_004841362.1
MIPVTEFRQFSEQQPAFRVLKPWWDVFTDYLSVAMLMIGVFGCTLQVMQDKIICLPKRVQPAQNHSSVSNVSQAVASTTPLPLPKPSPTNPAPVEMKGLKTDLDLQQYSFINQMCYERALHWYAKYFPYLVLIHTLVFMLCSNFWFKFPGSSSKIEHFISILGKCFDSPWTTRALSEVSGEDSEEKDNRKNNMNRSNTTQSGPEGSLVNSQSLKSIPEKFVVDKSTAGALDKKEGEQAKALFEKVKKFRLHVEEGDILYAMYVRQTVLKVIKFLIIIAYNSALVSKVQFTVDCNVDIQDMTGYKNFSCNHTMAHLFSKLSFCYLCFVSIYGLTCLYTLYWLFYRSLREYSFEYVRQETGIDDIPDVKNDFAFMLHMIDQYDPLYSKRFAVFLSEVSENKLKQLNLNNEWTPDKLRQKLQTNAHNRLELPLIMLSGLPDTVFEITELQSLKLEIIKNVMIPATIAQLDNLQELSLHQCSVKIHSAALSFLKENLKVLSVKFDDMRELPPWMYGLRNLEELYLVGSLSHDISKNVTLESLRDLKSLKILSIKSNVSKIPQAVVDVASHLQKMCIHNDGTKLVMINNLKKMTNLTELELVHCDLERIPHAVFSLLSLQELDLKENNLKSIEEIVSFQHLRKLTVLKLWHNSITYIPEHIKKLTSLERLSFSHNKIEVLPSHLFLCNKIRYLDLSYNDIRFIPPEVGVLQSLQYFSITCNKVESLPDELYFCKKLKTLKIGKNSLSVLSPKIGNLLFLSYLDVKGNHFEILPPELGDCRALKRAGLVVEDTLFETLPSDVREQMKAE