Details from NCBI annotation

Gene Symbol Ptcd1
Gene Name pentatricopeptide repeat domain 1, transcript variant X1
Entrez Gene ID 101696935

Database interlinks

Part of NW_004624740.1 (Scaffold)

For more information consult the page for NW_004624740.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000001780 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001611, Guinea pig)

Protein Percentage 85.61%
CDS Percentage 88.27%
Ka/Ks Ratio 0.25868 (Ka = 0.079, Ks = 0.3054)

Ptcd1 ENSMUSG00000029624 (Mouse)

Gene Details

pentatricopeptide repeat domain 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000031628, Mouse)

Protein Percentage 76.51%
CDS Percentage 79.78%
Ka/Ks Ratio 0.18848 (Ka = 0.1395, Ks = 0.7401)

Ptcd1 ENSRNOG00000000987 (Rat)

Gene Details

pentatricopeptide repeat domain 1 (Ptcd1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000057644, Rat)

Protein Percentage 76.65%
CDS Percentage 79.37%
Ka/Ks Ratio 0.19706 (Ka = 0.1463, Ks = 0.7423)

Genome Location

Sequence Coding sequence

Length: 2259 bp    Location: 32886076..32841105   Strand: -
>XM_004840504.1
ATGGCCTCTGTTGTACCAGTGAAAGAGAAGAAACTCATGGATGTCAAACTAGGAGAGCTGCCCAGCTGGATACTGATGCGGGATTTCACCCCTTCAGGCATTGTGGGAGCATTTCAGAGAGGTGCTGGTGGAACAGGAAAGCCAGAGATGGACCTTGTGAGACTTTCCCGGCTCTTCTGCAGCCCCTGCCCTGTGGGACTGTCCATCCTGCAACACCTCAACCCTCTTGGAGCCCGATGGGCAGGAGGCAGGGAGCAGCTTGCTATGTGGCAGACCTGGCAGGTGTCAGCCTGCAGTAGTTTTTCTTGTCGGCTGCCACTAGGTCAGAGGAGCCAGAAGAATTTGAGGAGCCTGCCTTCTGACCCGAGCCAGCCCAGCCCTGTGGCCCCTCAGGAGGAAGAGGAGGAGGAAGGCTTTGGAACCCTCTCCAACAAGTATTCTTCCCGGAAGTTATTCCACAAATCAACAGCCCAGTTGTATAACCTGCGGCTCGGGGAACAGAGTGATGAGGAAGAGGAACTGGAGCCAAAATTGTGGCGGGGCCGGAGGAACACCCCGTACTGGTACTTCTTTCAGTGTAAACGCCTGATCAAGGAAGGAAAGCTGGCCGAGGCTCTGGACCTGTTTGAGAGGCAGATGCTGAAAGAGGAACGACTGCAGCCCCTTGAGTGCAACTACACCGTGCTGATTGGAGGCTGCGGGCGAGCCGGCTACCTGAAGAAGGCCTTCCGGCTCTATAATGATATGAAAAAACGAGACCTGGAGCCTTCCGATGCCACGTACACAGCCCTGTTCAATGTCTGTGCTGAGTCCCCCTGGAAGGACTCAGCTCTGCAGACTGCCCTGAAGCTCCAGCAGCAGCTCCGGGCCAAAAATTTCCAGCTCAATCTGAAAACATACCACGCCCTGTTGAAGGTGGCTGCCAAGTGTGCAGACCTGAGGATGTGCCTCGATGTATTAAAGGAGATCGTCCACAAGGGCCATGTGCTCACAGAGGAGACCTTCAATTTCCTGCTTATGGGCTGCATCCAAGACAAAACGACCGGCTTCCGATATGCTCTGCAGGTGTGGAGACAGATGCTGAGTCTGGGGCTCGAGCCAAATCGGCACAGCTATAACCTGCTGTTGGGGGCTGCTCGAGATTGTGGCCTGGGGGACCCAGAGGTGGCCTCCAGGCTGCTCTTGAAGCCCAGAGAGGAGATGGTCCTGATCCAGTCCCCCACAGGCAAGCAGCGCGCAGGGAGGAGAGACAGGCCCAGGGCAGATGGTGGCATGTCAGCCAGACTGCACACGGAGGCCCTGGAGAGGCAGCTCTTCATGGAACTTTCACCATCACTGGAGGCCCCTCCAGAACCTTCAGAGGCCACAGTGCCTGGCAAGGCCCAGCCTGAGATGGGAACCAAGGCAGAGCCCAGCCACACTGCAGCCCTTGCCCCAGGGAGCCTAAAGTCACCTCCCTTGGAGCTGGTGGAGGTCAACCTCCTGGCCCTCGGGGCTGTCTCTCCAGCTGTGGTCTCACTTGGGACAGTGACCACCCCTGCTGACAGGCTGGTCTTGATGGGGGGTCTGGAGGGCTTCCTAGGCAAGATGGCAGAGCACGGGCTACAGCCCGACATTAAGACCCTCACACTACTGGCCGAGATGGTGGAGCCTGGCAGCCCTGCGGAGTCCTCGCTGCTGAGTGTCCTGGACAGGCACAAGGTGGAGGCTGACGTGACGTTCTTCAACACCCTGATGAGGAAGAAGAGCAGGCTGGGGGACCTGGAGGGGGCAAAGGCACTGTTGCCAGTCCTGGCGAAGAGGGGACTCATCCCCAATCTGCAGACGTTCTGCAACCTGGCCATTGGGTGCCACAGGCCTGGAGATGGTCTGCAGCTGCTTGCAGACATGAAGAAATCCCACATGACCCCAAACGTCCACATATACAGCACCCTCATCAATGCAGCCCTCAAGAAGCTGGACTATACGTATCTCATCGGCATCCTGAGGGACATGAAGCAGAGCAGAGTCCCAGTGAATGAAGTGGTCATCCGCCAGCTGGAGTTTGCAGCCAAGTACCCACCCACCTTTGACCGGTACCAAGGGAAGAATACCTACTTGGAGAAGATTGACGGTTTCCGAGCTTATTATAAGCAGTGGCTGAAAGCAATGCCAGCAGAGGAAACCCCCCACCCTTGGCAGGTGTTCCAGACCAAACCCAAAGGAGGCCAGGACACCGTCAGAGACACTGGTGTCGACAGAGGCCTTGGGGGCAGGTGA

Related Sequences

XP_004840561.1 Protein

Ptcd1 PREDICTED: pentatricopeptide repeat-containing protein 1, mitochondrial-like isoform X1 [Heterocephalus glaber]

Length: 752 aa     
>XP_004840561.1
MASVVPVKEKKLMDVKLGELPSWILMRDFTPSGIVGAFQRGAGGTGKPEMDLVRLSRLFCSPCPVGLSILQHLNPLGARWAGGREQLAMWQTWQVSACSSFSCRLPLGQRSQKNLRSLPSDPSQPSPVAPQEEEEEEGFGTLSNKYSSRKLFHKSTAQLYNLRLGEQSDEEEELEPKLWRGRRNTPYWYFFQCKRLIKEGKLAEALDLFERQMLKEERLQPLECNYTVLIGGCGRAGYLKKAFRLYNDMKKRDLEPSDATYTALFNVCAESPWKDSALQTALKLQQQLRAKNFQLNLKTYHALLKVAAKCADLRMCLDVLKEIVHKGHVLTEETFNFLLMGCIQDKTTGFRYALQVWRQMLSLGLEPNRHSYNLLLGAARDCGLGDPEVASRLLLKPREEMVLIQSPTGKQRAGRRDRPRADGGMSARLHTEALERQLFMELSPSLEAPPEPSEATVPGKAQPEMGTKAEPSHTAALAPGSLKSPPLELVEVNLLALGAVSPAVVSLGTVTTPADRLVLMGGLEGFLGKMAEHGLQPDIKTLTLLAEMVEPGSPAESSLLSVLDRHKVEADVTFFNTLMRKKSRLGDLEGAKALLPVLAKRGLIPNLQTFCNLAIGCHRPGDGLQLLADMKKSHMTPNVHIYSTLINAALKKLDYTYLIGILRDMKQSRVPVNEVVIRQLEFAAKYPPTFDRYQGKNTYLEKIDGFRAYYKQWLKAMPAEETPHPWQVFQTKPKGGQDTVRDTGVDRGLGGR