Sequence detailsNCBI ID: XM_004840263.1 (Coding sequence)  Best Hit

Details from NCBI annotation

Gene Symbol Vps41
Gene Name vacuolar protein sorting 41 homolog (S. cerevisiae), transcript variant X2
Entrez Gene ID 101708027

Database interlinks

Part of NW_004624740.1 (SequenceType object (1))

For more information consult the page for NW_004624740.1 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VPS41ENSCPOG00000006142 (Guinea pig)

Gene Details

vacuolar protein sorting 41 homolog (S. cerevisiae)

External Links

Gene Match(Ensembl Protein ID:ENSCPOP00000005539, Guinea pig)

Protein Percentage 97.05%
CDS Percentage 93.43%
Ka/Ks Ratio 0.05951 (Ka = 0.0141, Ks = 0.2374)

VPS41ENSG00000006715 (Human)

Gene Details

vacuolar protein sorting 41 homolog (S. cerevisiae)

External Links

Gene Match(Ensembl Protein ID:ENSP00000309457, Human)

Protein Percentage 96.6%
CDS Percentage 90.89%
Ka/Ks Ratio 0.04315 (Ka = 0.0167, Ks = 0.3874)

Vps41ENSMUSG00000041236 (Mouse)

Gene Details

vacuolar protein sorting 41 (yeast)

External Links

Gene Match(Ensembl Protein ID:ENSMUSP00000072729, Mouse)

Protein Percentage 96.48%
CDS Percentage 88.54%
Ka/Ks Ratio 0.02885 (Ka = 0.0172, Ks = 0.5971)

Vps41ENSRNOG00000012940 (Rat)

Gene Details

vacuolar protein sorting 41 homolog (S. cerevisiae) (Vps41), mRNA

External Links

Gene Match(Ensembl Protein ID:ENSRNOP00000063448, Rat)

Protein Percentage 97.11%
CDS Percentage 88.98%
Ka/Ks Ratio 0.02461 (Ka = 0.0136, Ks = 0.5508)

Genome Location

Sequence SequenceType object (2)

Length: 2562 bp    Location: 22121797..22297514   Strand: +
Raw sequence   
>XM_004840263.1
ATGGAGGAAGCAGAAGAGCAGGAAACCAGGTCTCTTGAAGAATCTACAGATGAGTCTGAGGAAGAAGAGAGTGAAGAGGAACCCAAGCTGAAATACGAAAGGCTTTCTAATGGGGTGACTGAAATTCTTCAGAAGGATGCAGCCAGCTGCATGACAGTCCATGACAAGTTTTTGGCACTGGGCACACATTATGGCAAGGTTTATTTACTTGATGTCCAGGGAAACATCACTCAGAAGTTTGATGTAAGTCCTGTGAAGATAAATCAGATTAGCCTGGATGAAAGTGGAGAGCACATGGGCGTGTGTTCAGAGGACGGCAAGGTGCAGGTGTTTGGACTGTATTCTGGAGAAGAATTTCATGAGACTTTTGACTGTCCCATTAAAATCATTGCTGTGCATCCACACTTTGTGAGATCCAGTTGTAAGCAGTTTGTGACCGGAGGGAAGAAGCTCCGGCTGTTTGAGCGGTCATGGATGAACAGATGGAAGTCTTCTGTCCTGCATGAAGGGGAAGGGAACATCCGCAGCGTGAAGTGGAGGGGCCATCTGATCGCCTGGGCCAATAACATGGGTGTGAAGATTTTTGACATCACCTCGAAGCAAAGAATCACCAATGTGCCCCGGGATGATGTGAGTCTCCGCCCAGATATGTATCCCTGCAGCCTCTGCTGGAAGGATGGTGTGACGCTGATCATTGGCTGGGGGACTTCCATCACGATATGCTCAGTGAAGGAGCGGCATGCCAGTGAAATGCGAGACTTGCCGAGTCGCTATGTTGAGATAGTGTCTCAGTTTGAAACTGAATTTTACATCAGTGGACTTGCACCTCTCTGTGACCAGCTTGCTGTACTTTCCTATGTAAAGGAGGTTTCAGAAAAAATGGAAAGAGAATACTGCGCCAGGCCAAGACTGGACATCATCCAGCCGCTCCCCGAGACTTGCGAGGAGATCTCCTCTGATGCCTTGACGGTCAGGGGCTTCCAGGAGAATGAGTGCAGGGACTACCATTTAGAATATTCCGAAGGGGAATCGCTCTTCTACATCGTGAGTCCAAGGGATGTCGTCGTGGCCAAGGAGCGAGACCAGGATGATCACATCGACTGGCTCCTGGAGAAGAAGAAATACGAAGAAGCTTTGATGGCAGCTGAAATTAGCCAAAGGAACATTAAAAGACATAAGATTCTGGATATTGGCTTGGCGTATATAAATCACCTGGTGGAAAAGGGAGAATATGACATAGCAGCACGCAAATGCCAGAAAATTCTTGGGAAAAATGCAGCACTCTGGGAATATGAAGTTTATAAATTTAAAGAAATTGGACAGCTTAAGGCTATTAGTCCTTATTTGCCAAGAGGGGATCCAGTTCTGAAACCACTCATCTATGAAATGATCTTACACGAATTTTTGGAAAGTGATTATGAGGGTTTTGCCACATTGATCCGCGAATGGCCTGGAAATCTGTACAACAATTCAGTAATAGTTCAAGCAGTTCGAGATCACCTGAAGAAAGATAGTCAGAACAAGACTTTACTTAAAACCCTGGCAGAATTGTATACCTATGACAAAAACTACGGCAATGCTCTGGAGATCTACCTGACACTGAGACATAAGGACGTTTTCCAGTTGATCCACAAGCATAATCTTTTCAGCTCTATCAAGGACAAGATAGTTTTATTAATGGATTTTGATTCGGAGAAAGCTGTTGACATGCTTTTGGACAATGAAGATAAAATTTCAATTAAAAAGGTAGTGGAAGAATTAGAAGACAGACCAGAGTTACAGCACGTGTATTTGCACAAACTCTTCAAGAGAGACCATCACAAGGGGCAGCGCTACCATGAGAAGCAGATCAGTCTCTACGCAGAGTATGATCGGCCCAACTTGCTGCCCTTTCTCCGAGACAGCACCCACTGCCCACTGGAGAAGGCTCTTGAAATCTGTCAACAGAGAAACTTTGTAGAAGAAACTGTTTATCTTCTAAGCCGGATGGGCAACAGCCGAAGTGCCCTGAAGATGATCATGGAGGAGTTACATGATGTGGATAAAGCAATTGAATTCGCCAAGGAGCAAGATGATGGAGAACTCTGGGAGGATCTCATTTTATATTCCATCGACAAACCACCATTTATTACTGGCTTGTTAAACAACATTGGTACACATGTTGACCCCATTCTGCTGATTCACCGAATTAAGGAAGGAATGGAGATTCCCAGTCTGAGAGATTCATTGGTAAAAATTCTCCAAGACTACAATTTGCAGATTCTGCTGCGGGAAGGCTGCAAGAAGATCCTTGTCGCCGACTCCTTGTCCTTACTGAAGAAGATGCACCGCACTCAAATGAAAGGCGTTCTGGTCGATGAGGAGAATATCTGCGAGTCCTGCCTGTCCCCCATCCTCCCTGCAGATGCAGCCAAGCCCTTCAGTGTGGTGGTCTTCCACTGCCGCCATATGTTCCACAAGGAGTGCCTGCCCGTGTCCGGCGTGAATTCTACACAGTACTGCAACATCTGCAGTGCCAAGAACCGCGGGCCGGGAAGCGTGATTTTGGACATGAAGAAGTAG

Related Sequences

XP_004840320.1 SequenceType object (4)

Vps41 PREDICTED: vacuolar protein sorting-associated protein 41 homolog isoform X2 [Heterocephalus glaber]

Length: 853 aa      View alignments
>XP_004840320.1
MEEAEEQETRSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLRLFERSWMNRWKSSVLHEGEGNIRSVKWRGHLIAWANNMGVKIFDITSKQRITNVPRDDVSLRPDMYPCSLCWKDGVTLIIGWGTSITICSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLAVLSYVKEVSEKMEREYCARPRLDIIQPLPETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKERDQDDHIDWLLEKKKYEEALMAAEISQRNIKRHKILDIGLAYINHLVEKGEYDIAARKCQKILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGNLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPSLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPILPADAAKPFSVVVFHCRHMFHKECLPVSGVNSTQYCNICSAKNRGPGSVILDMKK