Sequence details NCBI ID: XM_004840263.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Vps41
Gene Name vacuolar protein sorting 41 homolog (S. cerevisiae), transcript variant X2
Entrez Gene ID 101708027

Database interlinks

Part of NW_004624740.1 (Scaffold)

For more information consult the page for NW_004624740.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VPS41 ENSCPOG00000006142 (Guinea pig)

Gene Details

vacuolar protein sorting 41 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005539, Guinea pig)

Protein Percentage 97.05%
CDS Percentage 93.43%
Ka/Ks Ratio 0.05951 (Ka = 0.0141, Ks = 0.2374)

VPS41 ENSG00000006715 (Human)

Gene Details

vacuolar protein sorting 41 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000309457, Human)

Protein Percentage 96.6%
CDS Percentage 90.89%
Ka/Ks Ratio 0.04315 (Ka = 0.0167, Ks = 0.3874)

Vps41 ENSMUSG00000041236 (Mouse)

Gene Details

vacuolar protein sorting 41 (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000072729, Mouse)

Protein Percentage 96.48%
CDS Percentage 88.54%
Ka/Ks Ratio 0.02885 (Ka = 0.0172, Ks = 0.5971)

Vps41 ENSRNOG00000012940 (Rat)

Gene Details

vacuolar protein sorting 41 homolog (S. cerevisiae) (Vps41), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000063448, Rat)

Protein Percentage 97.11%
CDS Percentage 88.98%
Ka/Ks Ratio 0.02461 (Ka = 0.0136, Ks = 0.5508)

Genome Location

Sequence Coding sequence

Length: 2562 bp    Location: 22121797..22297514   Strand: +
Raw sequence   
>XM_004840263.1
ATGGAGGAAGCAGAAGAGCAGGAAACCAGGTCTCTTGAAGAATCTACAGATGAGTCTGAGGAAGAAGAGAGTGAAGAGGAACCCAAGCTGAAATACGAAAGGCTTTCTAATGGGGTGACTGAAATTCTTCAGAAGGATGCAGCCAGCTGCATGACAGTCCATGACAAGTTTTTGGCACTGGGCACACATTATGGCAAGGTTTATTTACTTGATGTCCAGGGAAACATCACTCAGAAGTTTGATGTAAGTCCTGTGAAGATAAATCAGATTAGCCTGGATGAAAGTGGAGAGCACATGGGCGTGTGTTCAGAGGACGGCAAGGTGCAGGTGTTTGGACTGTATTCTGGAGAAGAATTTCATGAGACTTTTGACTGTCCCATTAAAATCATTGCTGTGCATCCACACTTTGTGAGATCCAGTTGTAAGCAGTTTGTGACCGGAGGGAAGAAGCTCCGGCTGTTTGAGCGGTCATGGATGAACAGATGGAAGTCTTCTGTCCTGCATGAAGGGGAAGGGAACATCCGCAGCGTGAAGTGGAGGGGCCATCTGATCGCCTGGGCCAATAACATGGGTGTGAAGATTTTTGACATCACCTCGAAGCAAAGAATCACCAATGTGCCCCGGGATGATGTGAGTCTCCGCCCAGATATGTATCCCTGCAGCCTCTGCTGGAAGGATGGTGTGACGCTGATCATTGGCTGGGGGACTTCCATCACGATATGCTCAGTGAAGGAGCGGCATGCCAGTGAAATGCGAGACTTGCCGAGTCGCTATGTTGAGATAGTGTCTCAGTTTGAAACTGAATTTTACATCAGTGGACTTGCACCTCTCTGTGACCAGCTTGCTGTACTTTCCTATGTAAAGGAGGTTTCAGAAAAAATGGAAAGAGAATACTGCGCCAGGCCAAGACTGGACATCATCCAGCCGCTCCCCGAGACTTGCGAGGAGATCTCCTCTGATGCCTTGACGGTCAGGGGCTTCCAGGAGAATGAGTGCAGGGACTACCATTTAGAATATTCCGAAGGGGAATCGCTCTTCTACATCGTGAGTCCAAGGGATGTCGTCGTGGCCAAGGAGCGAGACCAGGATGATCACATCGACTGGCTCCTGGAGAAGAAGAAATACGAAGAAGCTTTGATGGCAGCTGAAATTAGCCAAAGGAACATTAAAAGACATAAGATTCTGGATATTGGCTTGGCGTATATAAATCACCTGGTGGAAAAGGGAGAATATGACATAGCAGCACGCAAATGCCAGAAAATTCTTGGGAAAAATGCAGCACTCTGGGAATATGAAGTTTATAAATTTAAAGAAATTGGACAGCTTAAGGCTATTAGTCCTTATTTGCCAAGAGGGGATCCAGTTCTGAAACCACTCATCTATGAAATGATCTTACACGAATTTTTGGAAAGTGATTATGAGGGTTTTGCCACATTGATCCGCGAATGGCCTGGAAATCTGTACAACAATTCAGTAATAGTTCAAGCAGTTCGAGATCACCTGAAGAAAGATAGTCAGAACAAGACTTTACTTAAAACCCTGGCAGAATTGTATACCTATGACAAAAACTACGGCAATGCTCTGGAGATCTACCTGACACTGAGACATAAGGACGTTTTCCAGTTGATCCACAAGCATAATCTTTTCAGCTCTATCAAGGACAAGATAGTTTTATTAATGGATTTTGATTCGGAGAAAGCTGTTGACATGCTTTTGGACAATGAAGATAAAATTTCAATTAAAAAGGTAGTGGAAGAATTAGAAGACAGACCAGAGTTACAGCACGTGTATTTGCACAAACTCTTCAAGAGAGACCATCACAAGGGGCAGCGCTACCATGAGAAGCAGATCAGTCTCTACGCAGAGTATGATCGGCCCAACTTGCTGCCCTTTCTCCGAGACAGCACCCACTGCCCACTGGAGAAGGCTCTTGAAATCTGTCAACAGAGAAACTTTGTAGAAGAAACTGTTTATCTTCTAAGCCGGATGGGCAACAGCCGAAGTGCCCTGAAGATGATCATGGAGGAGTTACATGATGTGGATAAAGCAATTGAATTCGCCAAGGAGCAAGATGATGGAGAACTCTGGGAGGATCTCATTTTATATTCCATCGACAAACCACCATTTATTACTGGCTTGTTAAACAACATTGGTACACATGTTGACCCCATTCTGCTGATTCACCGAATTAAGGAAGGAATGGAGATTCCCAGTCTGAGAGATTCATTGGTAAAAATTCTCCAAGACTACAATTTGCAGATTCTGCTGCGGGAAGGCTGCAAGAAGATCCTTGTCGCCGACTCCTTGTCCTTACTGAAGAAGATGCACCGCACTCAAATGAAAGGCGTTCTGGTCGATGAGGAGAATATCTGCGAGTCCTGCCTGTCCCCCATCCTCCCTGCAGATGCAGCCAAGCCCTTCAGTGTGGTGGTCTTCCACTGCCGCCATATGTTCCACAAGGAGTGCCTGCCCGTGTCCGGCGTGAATTCTACACAGTACTGCAACATCTGCAGTGCCAAGAACCGCGGGCCGGGAAGCGTGATTTTGGACATGAAGAAGTAG

Related Sequences

XP_004840320.1 Protein

Vps41 PREDICTED: vacuolar protein sorting-associated protein 41 homolog isoform X2 [Heterocephalus glaber]

Length: 853 aa      View alignments
>XP_004840320.1
MEEAEEQETRSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLRLFERSWMNRWKSSVLHEGEGNIRSVKWRGHLIAWANNMGVKIFDITSKQRITNVPRDDVSLRPDMYPCSLCWKDGVTLIIGWGTSITICSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLAVLSYVKEVSEKMEREYCARPRLDIIQPLPETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKERDQDDHIDWLLEKKKYEEALMAAEISQRNIKRHKILDIGLAYINHLVEKGEYDIAARKCQKILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGNLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEIPSLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESCLSPILPADAAKPFSVVVFHCRHMFHKECLPVSGVNSTQYCNICSAKNRGPGSVILDMKK