Sequence details NCBI ID: XM_004840169.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Srrt
Gene Name serrate RNA effector molecule homolog (Arabidopsis), transcript variant X7
Entrez Gene ID 101707531

Database interlinks

Part of NW_004624740.1 (Scaffold)

For more information consult the page for NW_004624740.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SRRT ENSCPOG00000001739 (Guinea pig)

Gene Details

serrate RNA effector molecule homolog (Arabidopsis)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001570, Guinea pig)

Protein Percentage 97.75%
CDS Percentage 94.04%
Ka/Ks Ratio 0.04698 (Ka = 0.0117, Ks = 0.2491)

SRRT ENSG00000087087 (Human)

Gene Details

serrate RNA effector molecule homolog (Arabidopsis)

External Links

Gene Match (Ensembl Protein ID: ENSP00000314491, Human)

Protein Percentage 98.15%
CDS Percentage 90.12%
Ka/Ks Ratio 0.01409 (Ka = 0.0086, Ks = 0.6075)

Srrt ENSMUSG00000037364 (Mouse)

Gene Details

serrate RNA effector molecule homolog (Arabidopsis)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000043123, Mouse)

Protein Percentage 96.52%
CDS Percentage 88.76%
Ka/Ks Ratio 0.02396 (Ka = 0.0159, Ks = 0.6642)

Srrt ENSRNOG00000048277 (Rat)

Gene Details

serrate RNA effector molecule homolog (Arabidopsis)

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000065372, Rat)

Protein Percentage 73.26%
CDS Percentage 72.33%
Ka/Ks Ratio 0.21481 (Ka = 0.2283, Ks = 1.063)

Genome Location

Sequence Coding sequence

Length: 2595 bp    Location: 16292560..16281893   Strand: -
Raw sequence   
>XM_004840169.1
ATGGGTGACAGCGATGACGAGTACGATCGAAGGCGCAGGGACAAGTTTAGAAGAGAGCGCAGCGACTATGACCGTTCTCGAGAAAGAGATGAAAGGCGGCGAGGGGATGATTGGAATGACCGGGAGTGGGACCGTGGCCGCGAGCGCCGCAGTCGGGGTGAATATCGTGACTATGACCGGAATCGACGGGAGCGCTTCTCTCCTCCCCGCCACGAGCTCAGCCCCCCACAGAAGCGCATGAGACGAGACTGGGATGAGCACAGCTCTGACCCATACCACAGTGGCTATGAGATGCCCTATGCTGGGGGGGGTGGGGGCCCAACTTATGGCCCCCCTCAGCCCTGGGGCCACCCAGACGTCCACATCATGCAGCACCATGTACTGCCTATCCAGGCCAGGCTGGGCAGCATTGCTGAGATTGACTTGGGTGTGCCGCCGCCAGTGATGAAGACCTTCAAGGAGTTCCTCCTGTCACTGGATGACTCTGTGGATGAGACCGAGGCTGTTAAGCGGTATAATGACTACAAGCTAGATTTTCGAAGGCAGCAGATGCAGGATTTTTTCCTGGCTCATAAAGACGAGGAGTGGTTTCGGTCTAAGTACCACCCAGATGAGGTGGGGAAGCGTCGGCAGGAAGCCCGGGGGGCACTGCAAAACCGACTGAGGGTGTTCTTGTCCCTCATGGAGAGTGGCTGGTTTGACAATCTTCTCCTGGACATAGACCGAGCTGATGCCATTGTCAAAATGTTGGATGCAGCTGTGATTAAGATGGAAGGAGGCACAGAGAATGATCTACGCATCCTGGAGCAAGAGGAAGAGGAGGAACAGCCAGGAAAGCCTGGGGAGCCCAGTAAGAAAGAGGAAGGCCGGGCTGGAGCAGGGCTGGGCGATGGAGAACGAAAGGCTGGTGATAAGGATGACAAGAAAGAAGATGGCAAGCAGGCAGAAAATGACGGCTCTAATGATGACAAAACTAAGAAATCTGAGGGCGATGGGGACAAGGAGGAGAAGAAAGAAGACTCGGAGAAGGAAGCTAAAAAGAGTAGCAAGAAGCGAAACAGGAAGCACAGTGGCGACGACAGCTTCGATGAGGGCAGCGTGTCTGAGTCTGAGTCTGAGTCCGAGAGTGGCCAGGCTGAGGGGGACAAAGAGACCGAAGGAGGACTTAAGGAAAAGGAGAAGCCCAAGGAAGAGGAAAGGGAGAAGCCTAAGGATGCTGCAGGGCTGGAATGTAAGCCCCGGCCTCTGCATAAGACTTGCTCCCTCTTCATGCGCAACATTGCACCCAATATCTCCCGGGCTGAGATCATCTCTCTTTGTAAAAGATACCCAGGTTTTATGCGTGTGGCACTGTCAGAGCCGCAGCCCGAGAGGAGATTTTTCCGTCGTGGCTGGGTGACGTTTGACCGCAGTGTTAACATTAAAGAGATCTGTTGGAACCTGCAAAATATCCGACTCCGTGAGTGTGAGCTGAGCCCAGGTGTGAACAGAGACCTGACCCGGCGTGTGCGGAACATCAATGGCATTACCCAGCACAAGCAGATAGTGCGCAACGACATCAAGCTGGCAGCCAAGCTGATCCATACACTGGATGACAGAACCCAGCTCTGGGCTTCTGAGCCGGGGACACCTCCTCTGCCAACAAGTCTGCCCTCACAGAACCCAATCCTGAAGAATATCACTGACTACCTGATCGAGGAAGTGAGTGCTGAGGAAGAGGAGCTACTGGGGAGCAGTGGGGGGGCTCCCCCTGAGGAGCCTCCGAAGGAAGGGAACCCAGCGGAGATCAATGTGGAGCGGGATGAGAAGCTGATCAAGGTTTTGGACAAGCTCCTCCTCTATCTGCGCATTGTGCATTCCCTGGATTATTACAACACCTGCGAGTACCCCAATGAGGACGAGATGCCCAATCGCTGCGGCATCATCCACGTTCGGGGGCCCATGCCTCCCAACCGCATCAGTCATGGAGAAGTGCTGGAGTGGCAGAAGACCTTTGAGGAGAAGCTGACCCCCTTGCTGAGTGTTCGGGAATCCCTTTCTGAGGAAGAGGCCCAGAAGATGGGCCGCAAAGATCCTGAGCAGGAAGTGGAAAAATTTGTTACCTCTAACACCCAGGAACTGGGCAAGGATAAGTGGCTATGTCCTCTCAGTGGCAAGAAATTCAAGGGTCCTGAGTTTGTTCGCAAACATATCTTCAATAAACATGCAGAGAAGATTGAGGAGGTAAAGAAGGAAGTGGCGTTCTTTAACAACTTCCTCACAGATGCCAAACGCCCAGCTCTGCCGGAGATCAAGCCGGCCCAGCCACCTGGCCCTGCCCAGAGTCTGACCCCGGGACTGCCCTACCCACACCAAACTCCCCAGGGCCTGATGCCCTATGGCCAGCCCCGGCCCCCCATTTTGGGCTATGGAGTCCCCACAGGAGGACCTCCATACCCCCATGCCCCATACGGTGCTGGCAGAGGGAACTATGATGCTTTCCGAGGCCAGGGTGGCTATCCTGGGAAACCTCGAAGCAGGATGGTTCGGGGAGACCCCAGAGCCATTGTAGAGTATCGTGACCTGGATGCCCCAGATGATGTTGATTTCTTTTGA

Related Sequences

XP_004840226.1 Protein

Srrt PREDICTED: serrate RNA effector molecule homolog isoform X7 [Heterocephalus glaber]

Length: 864 aa      View alignments
>XP_004840226.1
MGDSDDEYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRERFSPPRHELSPPQKRMRRDWDEHSSDPYHSGYEMPYAGGGGGPTYGPPQPWGHPDVHIMQHHVLPIQARLGSIAEIDLGVPPPVMKTFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRRQEARGALQNRLRVFLSLMESGWFDNLLLDIDRADAIVKMLDAAVIKMEGGTENDLRILEQEEEEEQPGKPGEPSKKEEGRAGAGLGDGERKAGDKDDKKEDGKQAENDGSNDDKTKKSEGDGDKEEKKEDSEKEAKKSSKKRNRKHSGDDSFDEGSVSESESESESGQAEGDKETEGGLKEKEKPKEEEREKPKDAAGLECKPRPLHKTCSLFMRNIAPNISRAEIISLCKRYPGFMRVALSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECELSPGVNRDLTRRVRNINGITQHKQIVRNDIKLAAKLIHTLDDRTQLWASEPGTPPLPTSLPSQNPILKNITDYLIEEVSAEEEELLGSSGGAPPEEPPKEGNPAEINVERDEKLIKVLDKLLLYLRIVHSLDYYNTCEYPNEDEMPNRCGIIHVRGPMPPNRISHGEVLEWQKTFEEKLTPLLSVRESLSEEEAQKMGRKDPEQEVEKFVTSNTQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIEEVKKEVAFFNNFLTDAKRPALPEIKPAQPPGPAQSLTPGLPYPHQTPQGLMPYGQPRPPILGYGVPTGGPPYPHAPYGAGRGNYDAFRGQGGYPGKPRSRMVRGDPRAIVEYRDLDAPDDVDFF