Details from NCBI annotation

Gene Symbol Trim50
Gene Name tripartite motif containing 50
Entrez Gene ID 101709438

Database interlinks

Part of NW_004624740.1 (Scaffold)

For more information consult the page for NW_004624740.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000013325 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011996, Guinea pig)

Protein Percentage 94.25%
CDS Percentage 91.58%
Ka/Ks Ratio 0.0666 (Ka = 0.0293, Ks = 0.4394)

Trim50 ENSMUSG00000053388 (Mouse)

Gene Details

tripartite motif-containing 50

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000066662, Mouse)

Protein Percentage 86.96%
CDS Percentage 84.06%
Ka/Ks Ratio 0.0746 (Ka = 0.0702, Ks = 0.9404)

Trim50 ENSRNOG00000022483 (Rat)

Gene Details

tripartite motif-containing 50 (Trim50), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000036145, Rat)

Protein Percentage 87.37%
CDS Percentage 84.61%
Ka/Ks Ratio 0.07871 (Ka = 0.0675, Ks = 0.8581)

Genome Location

Sequence Coding sequence

Length: 1464 bp    Location: 14404737..14409933   Strand: +
>XM_004840074.1
ATGGCGTGGCAGGTGAGCGTGCCCGAGCTGCAGGATCAGCTTCAGTGCCCCATCTGCCTGGAGGTCTTCAAGGAGCCCCTGATGCTGCAATGCGGCCACTCCTACTGTAAGGGCTGCCTGGTGTCTTTGTCCTGCCACCTGGACTCGGAGCTCCGCTGCCCTGTGTGTCGCCAGGAGGTGGATGGCAGCAGCTCCCCGCCCAACGTCTCCCTGGCCCGGGTGATTGAAGCCCTGCGGCTCCCAGGGGGTGCAGAGCCCATGGTCTGTGAGCACCACCGAAACCCACTCAGCCTTTTCTGCGAGAAGGACCAGGAGCTCATCTGCGGCCTCTGTGGCCTGCTGGGCTCCCACCAGCACCACCCAGTCACGCCTGTGTCCACCGTCTACAGCCGCATGAAGGAGGAGCTTGCAGCCCTCATCTCTGATGTGCAGCAGGAGCAGAAGGAGGTGGACGAGCTTATTGCCAAACTGGTGAACAACAGGACTCGGATTGTCAATGAGTCCGATGTCTTCAGCTGGGTGATCCGCCGAGAGTTCCAGGAGCTGCACCACCTGGTGGATGAGGAGAAGGCCCGCTGCCTGGAGGGGGTGGAGGGTCACACGCGAGGCCTAGTGGCCTCCCTGGAGATGCAGCTGGAGCAGGCCCAGGGCACTCGGGAGCGGCTGGCCCAGGCCAAGTGTGCGCTCCAGCAGTTCGGCAACGAGAGTTACCACGAGTTCATCCGGAAGTACCACGCCATGACCTCCAGAGCCGAGCTCCAGCAGGCGCGGCCCTTGGAAGGCACGTTCAGCCCTATCTCCTTCAAGCCAGGCCTGCACCAGGCCGACATCAAGCTGACCGTGTGGAAAAGGCTGTTCCGGAAAGTTCTGCCAGCCCCAGAGTCTCTCAAGCTGGACCCTGCCACTGCCCACCCCCTCCTGGAGCTCTCCAAGGGCAACACAGTGGTACAGTGTGGGCTCCTGACCCAGCGACGTGCCAGCCAGCCTGAGCGCTTTGACTATAGCACCTGTGTCCTGGCCACCCGGGGGTTCTCCTGTGGCCGCCACTACTGGGAGGTCGTGGTGGGCAGCAAGAGCGACTGGCGCCTGGGGGTCATCAAGGGCACTGCCAGCCGCAAGGGCAAGCTGAGCAAGTCCCCGGAACATGGCCTGTGGCTAATCGGCCTCAAGGAGGGCCGAGTGTATGAGGCCTTCAGCTGCCCGCGGGTGCTGCTGCCTGTGGCGGGCCACCCCCACCGCATTGGGGTCTACCTGCACTATGAGCAGGGGGAGCTCACCTTCTTTGATGCTGATCGCCCTGATGACCTGCGACTGATTTATACCTTCCAGGCTGACTTCCAGGGCAAGCTCTTCCCCATCCTGGACACATGCTGGCATGAGAGGGGCAGCAACTCACTGCCCATGGTGTTGCCCCCGCCCAGCGGGCCTGGCCACCTCACTCCCCGGCAGCCTACCACACTGTAG

Related Sequences

XP_004840131.1 Protein

Trim50 PREDICTED: E3 ubiquitin-protein ligase TRIM50 [Heterocephalus glaber]

Length: 487 aa     
>XP_004840131.1
MAWQVSVPELQDQLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDSELRCPVCRQEVDGSSSPPNVSLARVIEALRLPGGAEPMVCEHHRNPLSLFCEKDQELICGLCGLLGSHQHHPVTPVSTVYSRMKEELAALISDVQQEQKEVDELIAKLVNNRTRIVNESDVFSWVIRREFQELHHLVDEEKARCLEGVEGHTRGLVASLEMQLEQAQGTRERLAQAKCALQQFGNESYHEFIRKYHAMTSRAELQQARPLEGTFSPISFKPGLHQADIKLTVWKRLFRKVLPAPESLKLDPATAHPLLELSKGNTVVQCGLLTQRRASQPERFDYSTCVLATRGFSCGRHYWEVVVGSKSDWRLGVIKGTASRKGKLSKSPEHGLWLIGLKEGRVYEAFSCPRVLLPVAGHPHRIGVYLHYEQGELTFFDADRPDDLRLIYTFQADFQGKLFPILDTCWHERGSNSLPMVLPPPSGPGHLTPRQPTTL