Details from NCBI annotation

Gene Symbol Stx1a
Gene Name syntaxin 1A (brain), transcript variant X2
Entrez Gene ID 101701572

Database interlinks

Part of NW_004624740.1 (Scaffold)

For more information consult the page for NW_004624740.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

STX1A ENSCPOG00000003386 (Guinea pig)

Gene Details

syntaxin 1A (brain)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003060, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 95.7%
Ka/Ks Ratio 0.001 (Ka = 0.0003, Ks = 0.2931)

STX1A ENSG00000106089 (Human)

Gene Details

syntaxin 1A (brain)

External Links

Gene Match (Ensembl Protein ID: ENSP00000222812, Human)

Protein Percentage 98.95%
CDS Percentage 92.8%
Ka/Ks Ratio 0.0109 (Ka = 0.0071, Ks = 0.6468)

Stx1a ENSMUSG00000007207 (Mouse)

Gene Details

syntaxin 1A (brain)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000005509, Mouse)

Protein Percentage 99.3%
CDS Percentage 92.1%
Ka/Ks Ratio 0.00329 (Ka = 0.0028, Ks = 0.8358)

Stx1a ENSRNOG00000029165 (Rat)

Gene Details

syntaxin 1A (brain) (Stx1a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000040699, Rat)

Protein Percentage 99.65%
CDS Percentage 92.1%
Ka/Ks Ratio 0.00169 (Ka = 0.0014, Ks = 0.8194)

Genome Location

Sequence Coding sequence

Length: 912 bp    Location: 14104050..14120133   Strand: +
>XM_004840050.1
ATGCGGGGCTCACTCGCTGCAGCCGGTGCCGCTGCCACTCCCGGGAGCATGAAGGACCGAACCCAGGAGCTCCGCACGGCCAAGGACAGCGATGACGACGATGATGTCACTGTCACTGTGGACCGAGACCGTTTCATGGATGAGTTCTTCGAGCAGGTGGAAGAGATCCGAGGCTTCATTGACAAGATCGCAGAGAACGTGGAGGAGGTGAAGCGCAAGCACAGCGCCATCCTGGCCTCCCCCAACCCCGATGAGAAGACCAAGGAGGAGCTCGAAGAACTCATGTCTGACATAAAGAAGACAGCGAACAAAGTTCGTTCCAAGTTAAAGAGCATCGAGCAGAGCATCGAGCAGGAGGAAGGCCTGAACCGCTCCTCTGCAGACCTGAGGATCCGAAAGACCCAGCACTCCACGCTGTCCCGGAAGTTTGTAGAGGTCATGTCAGAGTACAACGCGACACAGTCCGACTACCGAGAGCGCTGCAAAGGCCGCATCCAGAGGCAGCTAGAAATCACTGGCAGGACCACAACCAGTGAGGAATTGGAGGACATGCTGGAGAGTGGAAACCCTGCCATCTTTGCCTCCGGGATCATCATGGACTCCAGCATCTCGAAGCAGGCTCTGAGCGAGATCGAGACCAGGCATAGTGAGATCATCAAGCTGGAGAACAGCATCCGCGAGCTGCACGACATGTTCATGGACATGGCCATGCTGGTTGAGAGCCAGGGGGAGATGATTGACAGGATCGAGTACAACGTGGAGCACGCGGTGGACTATGTGGAGCGGGCCGTGTCTGACACCAAGAAGGCCGTCAAGTACCAGAGCAAGGCACGCCGGAAAATCATGATCATCATCTGCTGTGTGATCCTGGGCATTGTCATCGCTTCTACCATCGGAGGCATCTTTGGATAG

Related Sequences

XP_004840107.1 Protein

Stx1a PREDICTED: syntaxin-1A isoform X2 [Heterocephalus glaber]

Length: 303 aa      View alignments
>XP_004840107.1
MRGSLAAAGAAATPGSMKDRTQELRTAKDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKIMIIICCVILGIVIASTIGGIFG