Sequence details NCBI ID: XM_004839844.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Vstm2a
Gene Name V-set and transmembrane domain containing 2A, transcript variant X2
Entrez Gene ID 101724726

Database interlinks

Part of NW_004624740.1 (Scaffold)

For more information consult the page for NW_004624740.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VSTM2A ENSCPOG00000002578 (Guinea pig)

Gene Details

V-set and transmembrane domain containing 2A

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002345, Guinea pig)

Protein Percentage 88.68%
CDS Percentage 86.95%
Ka/Ks Ratio 0.10848 (Ka = 0.0694, Ks = 0.6397)

VSTM2A ENSG00000170419 (Human)

Gene Details

V-set and transmembrane domain containing 2A

External Links

Gene Match (Ensembl Protein ID: ENSP00000384967, Human)

Protein Percentage 89.22%
CDS Percentage 87.36%
Ka/Ks Ratio 0.14844 (Ka = 0.0688, Ks = 0.4634)

Vstm2a ENSMUSG00000048834 (Mouse)

Gene Details

V-set and transmembrane domain containing 2A

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000105272, Mouse)

Protein Percentage 87.07%
CDS Percentage 83.33%
Ka/Ks Ratio 0.09446 (Ka = 0.0723, Ks = 0.7658)

Vstm2a ENSRNOG00000005180 (Rat)

Gene Details

V-set and transmembrane domain containing 2A

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000063877, Rat)

Protein Percentage 68.12%
CDS Percentage 69.08%
Ka/Ks Ratio 0.15013 (Ka = 0.2426, Ks = 1.6157)

Genome Location

Sequence Coding sequence

Length: 699 bp    Location: 1023478..999845   Strand: -
Raw sequence   
>XM_004839844.1
ATGATGGGGGTCCTGGCGGCGGTGGGGCTGGTTTTCTTCTCGGCTGTGTGTGTGCAACCAGGGCTCTGCTCCCAAGCCAAATTCACCGAGTTCCCGCGGAACGTGACGGCCACGGAGGGGCAGAACGTGGAGATGAGCTGCGCCTTCCAGAGCGGCGCCGCCTCAGTCTACCTGGAGATCCAGTGGTGGTTCCTGCGCGGGCCCGGGGACGCGGCGCCCGAGGGCGGCCTGCAGGCGGAGCTCTTGCCCGACCGAGACCCGGACCTGGACGGCACCAAGATCAGCACAGTGAAAGTCCAAGGCAATGACATCTCCCACAAGCTTCAGATTTCCAAAGTGAGGAAAAAGGATGAAGGTCTCTACGAGTGCAGGGTGACGGATGCCAATTACGGGGAGCTTCGGGAGCACAAGGCCCAGGCCTACCTGAAGGTCAACGCCAACAGCCACGCCCGCAGGATGCAGGCCTTCGAAGCCTCGCCCATGTGGCTGCAGGACGCGAAGCCTCGCAAGAACGCCTCCGCCGCCCTCCCCAGCCTGGCCCACAGCTCTGCCAACCAGCGAACGCACTCCACCTCCAGCCCGCAGGCCGTGGCCAGGATCCCCAAACAAAGTCCGCAATCAGGTGCGAGGATAGCTACAAGCCATGGACTTTCTGTCCTGCTTCTTGTTTGTGGCTTTGTGAAGGGTGCTTTGCTTTGA

Related Sequences

XP_004839901.1 Protein

Vstm2a PREDICTED: V-set and transmembrane domain-containing protein 2A isoform X2 [Heterocephalus glaber]

Length: 232 aa      View alignments
>XP_004839901.1
MMGVLAAVGLVFFSAVCVQPGLCSQAKFTEFPRNVTATEGQNVEMSCAFQSGAASVYLEIQWWFLRGPGDAAPEGGLQAELLPDRDPDLDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELREHKAQAYLKVNANSHARRMQAFEASPMWLQDAKPRKNASAALPSLAHSSANQRTHSTSSPQAVARIPKQSPQSGARIATSHGLSVLLLVCGFVKGALL