Sequence details NCBI ID: XM_004839777.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sema3d
Gene Name sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D, transcript variant X5
Entrez Gene ID 101711108

Database interlinks

Part of NW_004624739.1 (Scaffold)

For more information consult the page for NW_004624739.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA3D ENSCPOG00000011580 (Guinea pig)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010417, Guinea pig)

Protein Percentage 87.24%
CDS Percentage 86.64%
Ka/Ks Ratio 0.1108 (Ka = 0.0658, Ks = 0.594)

SEMA3D ENSG00000153993 (Human)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D

External Links

Gene Match (Ensembl Protein ID: ENSP00000284136, Human)

Protein Percentage 85.81%
CDS Percentage 79.35%
Ka/Ks Ratio 0.06377 (Ka = 0.0777, Ks = 1.2177)

Sema3d ENSMUSG00000040254 (Mouse)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000030868, Mouse)

Protein Percentage 84.9%
CDS Percentage 79.31%
Ka/Ks Ratio 0.06806 (Ka = 0.0829, Ks = 1.2186)

Sema3d ENSRNOG00000007202 (Rat)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D (Sema3d), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009489, Rat)

Protein Percentage 85.16%
CDS Percentage 79.18%
Ka/Ks Ratio 0.06698 (Ka = 0.0835, Ks = 1.2472)

Genome Location

Sequence Coding sequence

Length: 2337 bp    Location: 33140968..32981161   Strand: -
Raw sequence   
>XM_004839777.1
ATGAACATCGCTGAGGTCGGGAGGCAGAAGGGGAGGCCAGGTGCGCGCCTCCTCCCTGTCGTGCTGCTGCTGAGCACCGCGGTGCTGGTCCTCCCCGCTTTGGGGACTTCGAAGCAGGATGTGCCCCGACTCAAGCTGACCTACCAGGATTTGCTGCTTTCAAACAGCTGCATGCCCTTCCTGGGCTCCTCGGAGGGCCTGGATTTCCAGACTGTTCTGTTGGATGAGGAGCAGGGCCGGCTGCTGCTAGGAGCCAAGGACCACGTCTTCCTGCTCAGCCTGGCCGACCTCAACCGCAACTTCAAGAAGATCTATTGGCCTGCTGCGAAAGAACGGGTGGAATTATGCAAACTGGCTGGGAAAGATGCCAATACAGAATGTGCGAATTTCATCAGAGTGCTTCAACCCTACAACAAAACTCACACTTATGTGTGTGGAACGGGAGCTTTTCACCCAGTGTGTGGCTACATTGACCTTGGAGTCTCTAAGGAGGAAGTAGCGTTCAAACTGGACACCCATAACCTGGAGTCGGGTAGGCTGAAGTGCCCCTTTGACCCTCAGCAGGCTTTTGCGTCTGTGATGACAGGTGAGCACCTCTACTCGGGAACGGCGTCCGACTTCCTGGGCAAAGACCCTGCGTTCACGCGGTCCCTGGGACCCACGCAGGACCACTACATCCGGACCGACATTTCAGAGCACTACTGGCTCAACGGAGCAAAGTTTATTGGAACTTTCCCTATCCCAGACACCTACAATCCAGACGATGACAAAATATATTTCTTCTTTCGTGAATCATCTCAAGAAGGCAGCACTTCTGACAAGGCCATCCTCTCCAGAGTCGGGAGAGTTTGTAAGAATGACGTGGGAGGACAGCGCAGCCTGATAAACAAGTGGACCACCTTCCTGAAGGCCCGGCTGGTCTGCTCCATTCCTGGGAGCGACGGGGCAGACACCCATTTTGATGAGCTGCAAGATATTTATTTACTCCCTACAAGAGATGAAAGAAATCCTGTAGTATATGGAGTCTTTACCACATCCAGCTCCGTGTTCAGAGGCTCGGCCGTGTGCGTGTACAGCATGGCAGATGTCAGGGCCGCCTTCAACGGGCCCTACGCCCACAAGGAGAGCGCGGACCACCGCTGGGTGCAGTACGACGGGCGCATCCCGTACCCCCGGCCCGGCACGTGTCCCAGCAGAACCTATGACCCACTGATCAAGTCCACCAGAGACTTCCCCGACGATGTGGTCAGCTTCATCCGCAGACACCCGCTGATGTACAAGGCCGTGTACCCAGCCGCAGGGGCACCGAGCTTCAAGCGGATCAACGTGGACTACAGGCTCACACAGATCGTGGTGGACCACGTGGTGGCTGAGGACGGGCAGTACGACGTCATGTTCCTAGGGACAGACATCGGAACTGTGCTCAAAGTGGTCAGCATTTCCAAGGAGAAGTGGAGCATGGAGGAAGTCGTGCTGGAGGAGCTGCAGGTCTTCAAGCACTCACGGAGCATCTTGGCCATGGAGCTGTCTCTGAAGCAGCAACAGCTGTACGTTGGTTCCCGAGACGGGTTGGTTCAGCTCTCCCTGCACAGATGCGACACCTACGGGAAAGCGTGTGCGGACTGCTGCCTGGCCAGAGACCCTTACTGTGCCTGGGACGGACACGCCTGCTCTCGGTACGCGCCCACCTCCAAGAGGCGAGCGAGACGCCAAGATGTGAAGTATGGGGACCCGATTACCCAGTGCTGGGACATTGAGGACAGTATTAGCCATGAAGCTGCTGATGAAAAGGTGATTTTTGGCGTTGAGTTTAATTCGACCTTCCTGGAATGTGTTCCTAAATCCCAACAAGCATCGATTAAGTGGTACATCCAGCAGGCGGGCGAGGAGCATCGTGAGGAGCAGCTGAAGCCAGACGAGCGCATCATCAAGACGGAGTACGGGCTCCTGATCCGCAGCCTGCAGAGGAGGGACTCGGGCGTGTACTCCTGCAAGGCGCAGGAGCACAGCTTCGTGCACACGGTGGCCAGGCTCAGCCTGAACGTCATCGAGAGCCAGCAGATGGAGGGCAGCCAGAGGGCAGAGCGCGAGGATGGCCCGGCCAAGGACCTGCTGGCCGAGTCGCAGCTGCGCTACAAAGACTACATCCAGATCCTCAGCAGCCCGAGCTTCAGCCTGGACCAGTACTGCGAGCAGATGTGGCACCGGGAGAAGCGCAGGCAGCGGACCAAGGGCAGCCCCAAGTGGAAGCACATGCACGAGCTGAAGAAGAAGCGCAACCGCAGGCACCACGGGGGCCGGGCGGGGCCGCTCGGGGCCGTGGCCCTGGCTACGTAG

Related Sequences

XP_004839834.1 Protein

Sema3d PREDICTED: semaphorin-3D-like isoform X5 [Heterocephalus glaber]

Length: 778 aa      View alignments
>XP_004839834.1
MNIAEVGRQKGRPGARLLPVVLLLSTAVLVLPALGTSKQDVPRLKLTYQDLLLSNSCMPFLGSSEGLDFQTVLLDEEQGRLLLGAKDHVFLLSLADLNRNFKKIYWPAAKERVELCKLAGKDANTECANFIRVLQPYNKTHTYVCGTGAFHPVCGYIDLGVSKEEVAFKLDTHNLESGRLKCPFDPQQAFASVMTGEHLYSGTASDFLGKDPAFTRSLGPTQDHYIRTDISEHYWLNGAKFIGTFPIPDTYNPDDDKIYFFFRESSQEGSTSDKAILSRVGRVCKNDVGGQRSLINKWTTFLKARLVCSIPGSDGADTHFDELQDIYLLPTRDERNPVVYGVFTTSSSVFRGSAVCVYSMADVRAAFNGPYAHKESADHRWVQYDGRIPYPRPGTCPSRTYDPLIKSTRDFPDDVVSFIRRHPLMYKAVYPAAGAPSFKRINVDYRLTQIVVDHVVAEDGQYDVMFLGTDIGTVLKVVSISKEKWSMEEVVLEELQVFKHSRSILAMELSLKQQQLYVGSRDGLVQLSLHRCDTYGKACADCCLARDPYCAWDGHACSRYAPTSKRRARRQDVKYGDPITQCWDIEDSISHEAADEKVIFGVEFNSTFLECVPKSQQASIKWYIQQAGEEHREEQLKPDERIIKTEYGLLIRSLQRRDSGVYSCKAQEHSFVHTVARLSLNVIESQQMEGSQRAEREDGPAKDLLAESQLRYKDYIQILSSPSFSLDQYCEQMWHREKRRQRTKGSPKWKHMHELKKKRNRRHHGGRAGPLGAVALAT