Sequence details NCBI ID: XM_004839759.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sema3c
Gene Name sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C, transcript variant X4
Entrez Gene ID 101705229

Database interlinks

Part of NW_004624739.1 (Scaffold)

For more information consult the page for NW_004624739.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA3C ENSCPOG00000013376 (Guinea pig)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012041, Guinea pig)

Protein Percentage 94.41%
CDS Percentage 88.67%
Ka/Ks Ratio 0.04935 (Ka = 0.029, Ks = 0.5883)

SEMA3C ENSG00000075223 (Human)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C

External Links

Gene Match (Ensembl Protein ID: ENSP00000265361, Human)

Protein Percentage 94.41%
CDS Percentage 86.46%
Ka/Ks Ratio 0.04422 (Ka = 0.0291, Ks = 0.6583)

Sema3c ENSMUSG00000028780 (Mouse)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000030568, Mouse)

Protein Percentage 94.27%
CDS Percentage 85.09%
Ka/Ks Ratio 0.03509 (Ka = 0.0291, Ks = 0.8287)

Sema3c ENSRNOG00000006526 (Rat)

Gene Details

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C (Sema3c), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009132, Rat)

Protein Percentage 94.01%
CDS Percentage 84.69%
Ka/Ks Ratio 0.03483 (Ka = 0.0304, Ks = 0.873)

Genome Location

Sequence Coding sequence

Length: 2256 bp    Location: 29626186..29485762   Strand: -
Raw sequence   
>XM_004839759.1
ATGGCATCCCGGGCAATCTGCGTGTTGGTTGGAGTGTTTATTTGTTCTGTCTGCGTGAAAGGATCGTCCCAACCCCAAGCCAGAGTTTATTTAACGTTTGATGAGCTTCGAGCCACCAAGACCTCTGAATACTTCAGCCTGTCTCACCACCCATTAGACTATAGGATTTTACTCATGGACGAAGACCAGGACCGGATCTATGTGGGCAGCAAAGATCACATTCTTTCCCTGAATATTAACAACATAAGTCAAGAACCTTTGAGTGTTTTCTGGCCAGCATCTACAATCAAAGTTGAAGAGTGCAAAATGGCTGGCAAAGATCCTACGCATGGCTGTGGAAATTTCGTCCGTGTGATTCAGGTTTTCAACCGCACCCACCTGTACGTGTGCGGGAGCGGAGCTTTCAGCCCCGTCTGCACCTACGTGAACAGAGGCCGGAGATCCGAGGACCAAGTTTTCATGATCGACTCCAAATGTGAATCTGGAAAAGGTCGCTGCTCTTTCAACCCCAGCGTGAACACGGTGTCTGTCATGATCAATGAGGAGCTTTTCTCAGGAATGTATATAGATTTCATGGGGACAGATGCTGCTATTTTTCGAAGTTTAACCAAGAGGAATGCAGTCAGAACTGATCAACACAATTCCAAATGGCTGAGTGAGCCTGTGTTTGTGGATGCTCATGTCACTCCGGATGGCACCGACCCCAACGACGCCAAAGTGTACTTCTTCTTCAGAGAGAAGCTGACCGACAGCAACAGGAGCATGAAGCAGATCCATTCCATGATCGCGAGGATATGTCCTAATGACACAGGTGGCCTGCGTAGCCTGGTCAACAAGTGGACCACCTTCCTGAAGGCCCGGCTGGTGTGCTCCGTGCCGGACGAGGACGGCCCAGAAACGCACTTCGACGAATTAGAGGATGTGTTTCTGTTGGAAACCGATAATCCAAGGACAACACTGGTGTATGGCATTTTTACAACATCAAGCTCCGTCTTTAAAGGCTCCGCAGTGTGCGTGTATCACTTGTCTGACATACAGACTGTGTTCAATGGACCCTTCGCCCACAAGGAAGGGCCGAACCATCAGCTGATTTCCTACCAGGGTCGAATCCCATACCCTCGCCCCGGAACGTGTCCAGGAGGAGCATTCACACCCAACATGCGAACCACCAAGGAGTTCCCAGACGACGTGGTCACCTTCATCCGGAACCACCCGCTCATGTACAACTCCATCTACCCTGTCCACCGGCGGCCTCTGATCGTCCGCACAGGCACGGACTACAAGTACACCAGGATAGCCGTGGACCGCGTGAACGCGGCCGATGGCCAGTACCACGTCCTGTTTCTGGGAACCGATCGGGGCACTGTGCAGAAGGTTGTTGTTCTTCCTACCAACAGCTCGGCCAGTGGTGAGCTCATCCTGGAGGAGCTTGAAGTTTTTAAGACTCATGTTCCCATAACAACCATGAAAATCTCATCCAAAAAGCAACAGTTGTACGTGAGCTCCAACGAAGGGCTTTCCCAAGTATCCCTGCACCGCTGCCACATCTACGGCACAGCCTGTGCCGACTGCTGCCTGGCCCGGGACCCCTACTGTGCCTGGGATGGCTACTCCTGCTCCAGGTTCTACCCCACCGGCAAGCGGAGGAGCCGGAGGCAAGATGTGAGGCACGGGAATCCACTGACGCAATGCCGAGGGTTTAATCTAAAAGGATATAGAAATGCAGCTGAAGCCGTCCAGTATGGAGTGAAGAATAATACCACTTTTCTTGAGTGTGTTCCCAAGTCCCCACAGGCTTCCATCAAGTGGCTGTTGCAGAAGGACAAAGACAGGAGGAAAGAGGTGAAGCTGGGCGAGCGCATCATCGCCACCCCACAAGGCCTCCTGATCCGCTCTGTCCAAGATGCCGACCAAGGGCTGTATCACTGCATCGGGACAGAAAACAGCTTCAAGCAGACCATAGCCAAGATCAACTTCAAAGTTCTGGATTCAGAAATGGTGGCTGTGGTGACCGACAAGTGGTCCCCGTGGACCTGGGCCAGCTCCGTGAGAGCTCTGCCCTTCCACCCCAAGGACATCCTGGGGGCCTTCAGCCACTCGGAGATGCAGATGATCAACCAGTACTGCAAAGACACGCGGCAGCAGCAGCAGCTGGGCGACAAGGCTCAGAAGCCGAGGGGGGACTACGGCAAGCTGAAGGCTCTCGTCAATGGCCGGAAAAGTAGGAACAGGAGGAATCAGTTTCCAGAGTCATAA

Related Sequences

XP_004839816.1 Protein

Sema3c PREDICTED: semaphorin-3C isoform X4 [Heterocephalus glaber]

Length: 751 aa      View alignments
>XP_004839816.1
MASRAICVLVGVFICSVCVKGSSQPQARVYLTFDELRATKTSEYFSLSHHPLDYRILLMDEDQDRIYVGSKDHILSLNINNISQEPLSVFWPASTIKVEECKMAGKDPTHGCGNFVRVIQVFNRTHLYVCGSGAFSPVCTYVNRGRRSEDQVFMIDSKCESGKGRCSFNPSVNTVSVMINEELFSGMYIDFMGTDAAIFRSLTKRNAVRTDQHNSKWLSEPVFVDAHVTPDGTDPNDAKVYFFFREKLTDSNRSMKQIHSMIARICPNDTGGLRSLVNKWTTFLKARLVCSVPDEDGPETHFDELEDVFLLETDNPRTTLVYGIFTTSSSVFKGSAVCVYHLSDIQTVFNGPFAHKEGPNHQLISYQGRIPYPRPGTCPGGAFTPNMRTTKEFPDDVVTFIRNHPLMYNSIYPVHRRPLIVRTGTDYKYTRIAVDRVNAADGQYHVLFLGTDRGTVQKVVVLPTNSSASGELILEELEVFKTHVPITTMKISSKKQQLYVSSNEGLSQVSLHRCHIYGTACADCCLARDPYCAWDGYSCSRFYPTGKRRSRRQDVRHGNPLTQCRGFNLKGYRNAAEAVQYGVKNNTTFLECVPKSPQASIKWLLQKDKDRRKEVKLGERIIATPQGLLIRSVQDADQGLYHCIGTENSFKQTIAKINFKVLDSEMVAVVTDKWSPWTWASSVRALPFHPKDILGAFSHSEMQMINQYCKDTRQQQQLGDKAQKPRGDYGKLKALVNGRKSRNRRNQFPES