Sequence details NCBI ID: XM_004839589.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Snx13
Gene Name sorting nexin 13
Entrez Gene ID 101708022

Database interlinks

Part of NW_004624739.1 (Scaffold)

For more information consult the page for NW_004624739.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SNX13 ENSCPOG00000009570 (Guinea pig)

Gene Details

sorting nexin 13

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008589, Guinea pig)

Protein Percentage 97.39%
CDS Percentage 96.18%
Ka/Ks Ratio 0.09155 (Ka = 0.0127, Ks = 0.1385)

SNX13 ENSG00000071189 (Human)

Gene Details

sorting nexin 13

External Links

Gene Match (Ensembl Protein ID: ENSP00000398789, Human)

Protein Percentage 96.66%
CDS Percentage 94.29%
Ka/Ks Ratio 0.08022 (Ka = 0.0172, Ks = 0.2146)

Snx13 ENSMUSG00000020590 (Mouse)

Gene Details

sorting nexin 13

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000038430, Mouse)

Protein Percentage 96.87%
CDS Percentage 92.44%
Ka/Ks Ratio 0.0456 (Ka = 0.0156, Ks = 0.3411)

Snx13 ENSRNOG00000004186 (Rat)

Gene Details

sorting nexin 13 (Snx13), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000005637, Rat)

Protein Percentage 95.47%
CDS Percentage 91.32%
Ka/Ks Ratio 0.06132 (Ka = 0.0232, Ks = 0.3782)

Genome Location

Sequence Coding sequence

Length: 2874 bp    Location: 12468943..12587279   Strand: +
Raw sequence   
>XM_004839589.1
ATGTTAACAGAGGCCAGTCTATCCATATGGGGATGGGGAAGCCTTGGCATTGTCCTTTTTCTAATAACCTTTGGACCCTTTGTAATATTTTATTTGGCATTTTATATCCTCTGCTTTGTGGGTGGGGGTTTAGTGGTCACTCTCCTGTTTGGAAAAACAAACTCAGAAAAGCACCTAGAGCAGTGTGAGCACTCATTTCTTCCTCCCACATCAACTGGGGTTCCTAAGTGCTTAGAAGAAATGAAACGGGAAGCCAGGACTATTAAGATTGATAGAAGATTAACGGGTGCCAGTATAATTGATGAGCCTCTCCAGCAAGTTATCCAGTTTTCCTTGAGAGATTATGTCCAGTACTGGTATTACACACTAAGTGATGATGAATCTTTTCTTCTTGAAATTAGGCAAACTCTTCAAAATGCACTCATTCAGTTTGCTACGAGGTCAAAAGAAATAGACTGGCAACCTTATTTTACTACACGAATTGTAGATGATTTTGGCACACACCTAAGAGTATTCAGAAAGGCTCAACAAAGAATAACAGAGAAAGATGATCAAGTGAAAGGTACAGCAGAAGATCTGATAAATTCCTTCTTTGAAGTTGAAGTTGAAATGGAAAAGGAAGTTTGCCGTGACCTAGTGTGCACTTCTCCCAAAGATGAAGAAGGATTCCTAAGGGATTTGTGTGAGGTCTTATTATATTTATTGCTACCTCCTGGAGATTTCCAGAACAAGATCATGCGATACTTTGTCAGGGAAATCCTTGCACATGGAATTCTTCTTCCGTTAATAAATCAACTCAGTGATCCTGATTATATTAATCAATATGTCATATGGATGATCCGTGATTCTAATTGCAATTATGAGGCCTTTATGAACATTATTAAATTGAGTGACAATGTTGGAGAGCTAGAAGCAGTTAGAGATAAAGCAGCAGAAGAATTACAGTATCTTAGATCTTTAGATACAGCTGGTGATGATATCAACACTATCAAAAATCAAATAAATAGTTTACTGTTTGTAAAGAAAGTGTGTGACTCAAGAATACAGCGGTTACAGTCAGGCAAAGAAATAAATACTGTGAAACTGGCAGCAAACTTTGGGAAACTTTGCACAGTCCCGTTGGACAGCATTCTTATAGACAATGTTGCACTACAATTTTTTATGGATTACATGCAGCAAACTGGAGGTCAAGCACATCTTTTCTTCTGGATGACAGTGGAAGGGTACCGGGTTACAGCCCAGCAGCAGTTAGAGGTTTTATTAAGTCGTCAGAGAGATGGAAAACATCAAACCAACCAAACCAAAGGTCTTTTAAGAGCAGCTGCTGTTGGAATTTATGAGCAGTATTTATCTGAAAAGGCATCTCCAAGAGTTACTGTTGATGACTATTTAGTAGCAAAATTAGCAGATACTTTGAATCATGAAGATCCAACCCCTGAAATATTTGATGACATTCAGAGGAAGGTATATGAATTGATGCTACGAGATGAAAGGTTCTATCCTTCCTTCAGACAGAATGCACTGTATGTGCGCATGTTAGCTGAGCTGGACATGCTGAAAGACCCCAGTTTCAGAGGATCAGATGATGGGGATGGAGAATCTTTTAATGGATCTCCTACAGGAAGCATAAATTTGTCTTTAGATGACCTTTCAAGTGTAACTTCTGATGACTCAGTGCAACTTCATGCTTACATTTCAGATACCGGCGTTTGTAATGATCATGGCAAGACATATGCATTATATGCCATCACCGTCCACCGGCGCAATCTGAACACTGAAGAGATGTGGAAAACCTATCGTCGTTATAGTGACTTCCATGACTTCCACATGAGAATTACTGAACAGGTAATGAAATTTTTAAGCATATTGAAGCTTCCTGGTAAAAAGACTTTTAATAACATGGATAGAGATTTTTTAGAAAAAAGGAAAAAGGATCTAAATGCCTATTTACAATTACTATTAACTCCTGAAATGATGAAAGCATGCCCAGCTTTGGCTCACTGTGTATATGACTTCCTTGAGAATAAAGCCTACAGTAAAGGGAAAGGGGACTTTGCTCGCAAGATGGACACTTTTGTAAATCCACTTCGAAATTCTATGAGGAATGTTTCAAATGCAGTTAAATCCCTTCCTGATAGCTTGGCAGAAGGAATGACTAAAATGTCAGACAACATGGGCAAAATGTCAGAAAGATTAGGTCAAGACATAAAGCAATCATTTTTCAAGGTGCCTCCTTTAATTACAAAGACTGATTCAGATCCTGAACATTGTCGAGTCTCAGCTCAACTTGATGATAATGTGGATGACAATATTCCACTTAGGGTAATGTTGCTTCTCATGGATGAAGTTTTCGACTTGAAAGAGAGAAATCAGTGGTTGCGAAGGAATATCAAAAACCTACTTCAGCAGCTTATTAGAGCTACATACGGCGATACTATTAATAGAAAAATAGTTGACCATGTTGATTGGATGACCTCACCTGAACAAGTAGCCGACTCAGTGAAACGTTTCAGAGATGCATTTTGGCCAAATGGCATTTCAGCAGAGACTGTTCCATGCAGAGACAAAGCTATACGAATGAGAACAAGAATTGCAGGAAAAACAAAATTATTTGCAATAATGCCAGATGAACTGAAGCACATTATTGGAGCTGAGACAACACGGAAAGGTATTCTTCGTGTTTTTGAAATGTTTCAGCACAACCAGTTAAATAGGAGAATGGTTTATGTCTTCTTGGAAGGCTTTTTAGAAACGTTATTTCCACAGTATAAATTCCGTGAACTTTTCAACAAACTACATTCACGGTCAGAGCAGATGCAGAAATATAAACAGAAACTTCAAACTACTCAAATACCTTCTTCACAGAAAAGGTGA

Related Sequences

XP_004839646.1 Protein

Snx13 PREDICTED: sorting nexin-13 [Heterocephalus glaber]

Length: 957 aa      View alignments
>XP_004839646.1
MLTEASLSIWGWGSLGIVLFLITFGPFVIFYLAFYILCFVGGGLVVTLLFGKTNSEKHLEQCEHSFLPPTSTGVPKCLEEMKREARTIKIDRRLTGASIIDEPLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQNALIQFATRSKEIDWQPYFTTRIVDDFGTHLRVFRKAQQRITEKDDQVKGTAEDLINSFFEVEVEMEKEVCRDLVCTSPKDEEGFLRDLCEVLLYLLLPPGDFQNKIMRYFVREILAHGILLPLINQLSDPDYINQYVIWMIRDSNCNYEAFMNIIKLSDNVGELEAVRDKAAEELQYLRSLDTAGDDINTIKNQINSLLFVKKVCDSRIQRLQSGKEINTVKLAANFGKLCTVPLDSILIDNVALQFFMDYMQQTGGQAHLFFWMTVEGYRVTAQQQLEVLLSRQRDGKHQTNQTKGLLRAAAVGIYEQYLSEKASPRVTVDDYLVAKLADTLNHEDPTPEIFDDIQRKVYELMLRDERFYPSFRQNALYVRMLAELDMLKDPSFRGSDDGDGESFNGSPTGSINLSLDDLSSVTSDDSVQLHAYISDTGVCNDHGKTYALYAITVHRRNLNTEEMWKTYRRYSDFHDFHMRITEQVMKFLSILKLPGKKTFNNMDRDFLEKRKKDLNAYLQLLLTPEMMKACPALAHCVYDFLENKAYSKGKGDFARKMDTFVNPLRNSMRNVSNAVKSLPDSLAEGMTKMSDNMGKMSERLGQDIKQSFFKVPPLITKTDSDPEHCRVSAQLDDNVDDNIPLRVMLLLMDEVFDLKERNQWLRRNIKNLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRDAFWPNGISAETVPCRDKAIRMRTRIAGKTKLFAIMPDELKHIIGAETTRKGILRVFEMFQHNQLNRRMVYVFLEGFLETLFPQYKFRELFNKLHSRSEQMQKYKQKLQTTQIPSSQKR