Sequence details NCBI ID: XM_004839583.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hdac9
Gene Name histone deacetylase 9, transcript variant X1
Entrez Gene ID 101705971

Database interlinks

Part of NW_004624739.1 (Scaffold)

For more information consult the page for NW_004624739.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HDAC9 ENSCPOG00000005468 (Guinea pig)

Gene Details

histone deacetylase 9

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004924, Guinea pig)

Protein Percentage 93.54%
CDS Percentage 92.99%
Ka/Ks Ratio 0.25163 (Ka = 0.0417, Ks = 0.1657)

HDAC9 ENSG00000048052 (Human)

Gene Details

histone deacetylase 9

External Links

Gene Match (Ensembl Protein ID: ENSP00000408617, Human)

Protein Percentage 95.88%
CDS Percentage 93.6%
Ka/Ks Ratio 0.1084 (Ka = 0.0212, Ks = 0.1953)

Hdac9 ENSMUSG00000004698 (Mouse)

Gene Details

histone deacetylase 9

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000106443, Mouse)

Protein Percentage 92.01%
CDS Percentage 88.15%
Ka/Ks Ratio 0.11681 (Ka = 0.0475, Ks = 0.4067)

Hdac9 ENSRNOG00000004158 (Rat)

Gene Details

histone deacetylase 9 (Hdac9), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000005521, Rat)

Protein Percentage 91.1%
CDS Percentage 89.01%
Ka/Ks Ratio 0.13989 (Ka = 0.0481, Ks = 0.344)

Genome Location

Sequence Coding sequence

Length: 3255 bp    Location: 12161940..11431662   Strand: -
Raw sequence   
>XM_004839583.1
ATGGATGGGGTGGCTGGACGGGAGCAGCTCTTGGCTCAGCAAAGAATGCACAGTATGATCAGCTCAGTGGATGTGAAGTCAGAGGTTCCTGTGGGCCTGGAGCCCATCTCCCCCTTAGACCTAAGGACTGACCTCAGGATGATGATGCCAGTGGTGGACCCTGTCATCCGTGAGAAGCAGCTGCAGCAAGAGTTACTTCTTATCCAGCAGCAGCAACAAATCCAGAAGCAGCTCCTGATAGCAGAGTTTCAGAAACAGCACGAGAACTTGACACGGCAGCACCAGGCTCAACTTCAGGAGCACATCAAGTTGCAACAGGAACTTCTAGCCATAAAACAGCAACAAGAACTCCTAGAAAAGGAGCAGAAACTGGAGCAGCAGAGGCAAGAACAGGAAGTAGAGAGGCATCGCAGAGAACAGCAGCTTCCTCCTCTCAGAGGCAAAGATAGAGGACGAGAAAGGGCAGTGGCAAGTACTGAAGTAAAGCAGAAGCTTCAAGAATTCCTGTTGAGTAAATCAGCAACGAAAGACACTCCAACTAATGGAAAAAATCATTCCGTGAGCCGCCATCCCAAGCTCTGGTACACGGCTGCCCACCACACATCATTGGATCAAAGCTCTCCACCCCTTAGTGGAACTTCTCCATCCTACAAATATACATTACCAGGAACCCAGGATGCCAAGGATGATTTCCCTCTTCGAAAAACTGCCTCTGAGCCCAACTTGAAGGTGCGGTCCAGGTTAAAACAGAAAGTGACAGAGAGGAGAAGCAGCCCCTTACTCAGGCGGAAGGATGGAAATGTTGTCACTTCATTCAAGAAGCGAATGTTTGAGGTGACAGAATCCTCAGTCAGCAGCAGTTCTCCAGGATCTGGTCCCAGTTCACCAAACAATGGACCAGCTGGAAATGTTACTGAAAACGAGACTTCGGTTCTGCCTCCTGCTCCTCATGCTGAGCAACTGGTTTCACAGCAACGCATTCTAATTCATGAAGATTCCATGAACCTGCTAAGTCTTTATACTTCTCCTTCTTTACCCAACATTACTTTGGGACTCCCGGCAGGGCCATCCCAGCTCAACGCTTCAAATTCTCTCAAAGAAAAGCAGAAGTGTGAGGCGCAGACACTCAGGCAAGGTGTTCCTCTGCCTGGGCAGTATGGAGGCAACATCCCGGCGTCTTCTAGCCATCCTCATGTGGCTTTAGAGGGAAAGCCCAACAGCAGCCACCAAGCTCTCCTGCAGCATTTATTACTGAAAGAACAAATGCGACAACAAAAGCTTCTTGTGGCCGGTGGCGTTCCCTTACATCCACAGTCTCCCTTGGCAACAAAAGAGAGAATTTCGCCTGGGATTAGAGGTACCCATAAATTGCCCCGTCACAGACCCCTGAATCGAACCCAGTCTGCACCTTTGCCTCAGAGCACATTGGCTCAGTTGGTCATTCAGCAGCAACACCAGCAGTTCTTGGAGAAGCAGAAACAATACCAACAGCAGATTCACATGAACAAACTGCTTTCGAAATCTATTGAACAACTGAAGCAACCTGGCAGGCACCTTGAGGAAGCAGAGGAAGAGCTTCAGGGGGACCAGGCGATGCAGGAAGACAGAGCGCCCTCTAGTGACAACAGCACTAGGAGCGACAGCAGTGCTTGTGTGGATGACACAGTGGGACAAGTTGGGGCTGTGAAAGTCAAGGAGGAACCAGTGGACAGTGATGAAGATGCTCAGATCCAGGAAATGGAATCTGGGGAGCAGGCTGCTTTTATGCAACAGCAGCCCTTCCCGGAGCCCGCGCACACGCGTGCGCCCTCGGCGCGCCAGGCCCCGCCGGCCTCGGTGGGCACCGACGCCCTGGAGAAGCCCCGGCTGCTCTCGCGGGCGCACTCCTCCCCCGCCGCCTCCGTCCTACCCTACCCGGCAGCGGACCGCCCCCTCCAGCCTGGCTCTGCGACTGGAATTGTCTATGACACTCTGATGCTGAAACACCAGTGCATTTGTGGCAATTCCACCACCCACCCGGAGCACGCTGGACGAATACAGAGCATCTGGTCACGGCTTCAAGAAACTGGGCTCCTAAATAAATGTGAGCGCATTCAAGGTCGAAAAGCCAGCCTGGAGGAAATACAGCTTGTTCATTCTGAACATCACTCACTATTGTATGGCACCAGCCCCCTGGACGGACAGAAGCTGGACCCCAGGATCTTCCTAGGTGATGACTCTCAAAAGTTTTTTTCCTCATTACCTTGTGGTGGACTTGGGGTGGACAGTGACACCATTTGGAATGAGCTGCACTCGTCCGGTGCTGCACGCACGGCTGTTGGCTGTGTCATCGAGCTGGCTTCCAGAGTGGCCTCAGGAGAGCTGAAGAATGGATTTGCCGCTGTGAGACCTCCAGGTCATCATGCTGAAGAATCCACAGCCATGGGGTTCTGCTTTTTTAATTCAGTTGCAATTACCGCCAAATACTTGCGAGACCAACTAAATATAAGCAAGATATTGATTGTAGATCTGGATGTTCACCATGGAAACGGTACACAGCAGGCCTTTTATGCTGACCCCAGCATCCTGTACATTTCACTTCATCGCTATGATGACGGGAACTTTTTCCCTGGCAGTGGAGCCCCAAATGAGGTTGGAACAGGTCTTGGAGAAGGATACAATATAAATATTGCCTGGACAGGTGGCCTTGACCCTCCTATGGGAGATGTTGAGTACCTCGAAGCTTTCAGGACTGTCGTGATGCCTGTGGCCAAAGAGTTTGATCCAAACATGGTCCTAGTTTCCGCTGGATTTGATGCATTAGAAGGCCACACCCCTCCTCTGGGGGGGTACAAAGTAACAGCAAAATGCTTTGGTCATTTGACAAAGCAGTTGATGACACTGGCTGATGGACGTGCGGTGTTGGCTCTCGAAGGAGGACATGATCTCACAGCCATTTGTGATGCCTCAGAAGCCTGTGTCAATGCCCTGCTAGGAAATGAGCTGGAACCGCTTGCTGAAGATATTCTCCACCAAACTCCGAATATGAATGCTGTGGCTTCTTTACAGAAGATTATTGAAATTCAAAGTAAGTACTGGAAGTCGGTCAGGATGGTGGCTGTGCCAAGGGGCTGTGCTCTGCCTGGTGCTCAGCTGCAAGAGGAGTCAGAGACTGTTTCTGCTCTGGCCTCCCTGACGGTGGATGTGGAACAGCCCTTTGCTCAGGAAGACAGCAGAACTGCTGGTGAGCCCATGGAAGAGGAGCCAGCCTTGTGA

Related Sequences

XP_004839640.1 Protein

Hdac9 PREDICTED: histone deacetylase 9 isoform X1 [Heterocephalus glaber]

Length: 1084 aa      View alignments
>XP_004839640.1
MDGVAGREQLLAQQRMHSMISSVDVKSEVPVGLEPISPLDLRTDLRMMMPVVDPVIREKQLQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHIKLQQELLAIKQQQELLEKEQKLEQQRQEQEVERHRREQQLPPLRGKDRGRERAVASTEVKQKLQEFLLSKSATKDTPTNGKNHSVSRHPKLWYTAAHHTSLDQSSPPLSGTSPSYKYTLPGTQDAKDDFPLRKTASEPNLKVRSRLKQKVTERRSSPLLRRKDGNVVTSFKKRMFEVTESSVSSSSPGSGPSSPNNGPAGNVTENETSVLPPAPHAEQLVSQQRILIHEDSMNLLSLYTSPSLPNITLGLPAGPSQLNASNSLKEKQKCEAQTLRQGVPLPGQYGGNIPASSSHPHVALEGKPNSSHQALLQHLLLKEQMRQQKLLVAGGVPLHPQSPLATKERISPGIRGTHKLPRHRPLNRTQSAPLPQSTLAQLVIQQQHQQFLEKQKQYQQQIHMNKLLSKSIEQLKQPGRHLEEAEEELQGDQAMQEDRAPSSDNSTRSDSSACVDDTVGQVGAVKVKEEPVDSDEDAQIQEMESGEQAAFMQQQPFPEPAHTRAPSARQAPPASVGTDALEKPRLLSRAHSSPAASVLPYPAADRPLQPGSATGIVYDTLMLKHQCICGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTSPLDGQKLDPRIFLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSGAARTAVGCVIELASRVASGELKNGFAAVRPPGHHAEESTAMGFCFFNSVAITAKYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDDGNFFPGSGAPNEVGTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTVVMPVAKEFDPNMVLVSAGFDALEGHTPPLGGYKVTAKCFGHLTKQLMTLADGRAVLALEGGHDLTAICDASEACVNALLGNELEPLAEDILHQTPNMNAVASLQKIIEIQSKYWKSVRMVAVPRGCALPGAQLQEESETVSALASLTVDVEQPFAQEDSRTAGEPMEEEPAL