Sequence details NCBI ID: XM_004839522.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hoxa1
Gene Name homeobox A1
Entrez Gene ID 101711967

Database interlinks

Part of NW_004624739.1 (Scaffold)

For more information consult the page for NW_004624739.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HOXA1 ENSCPOG00000013500 (Guinea pig)

Gene Details

homeobox A1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012155, Guinea pig)

Protein Percentage 95.95%
CDS Percentage 93.87%
Ka/Ks Ratio 0.09717 (Ka = 0.0194, Ks = 0.2001)

HOXA1 ENSG00000105991 (Human)

Gene Details

homeobox A1

External Links

Gene Match (Ensembl Protein ID: ENSP00000343246, Human)

Protein Percentage 94.89%
CDS Percentage 91.99%
Ka/Ks Ratio 0.08762 (Ka = 0.0266, Ks = 0.3042)

Hoxa1 ENSMUSG00000029844 (Mouse)

Gene Details

homeobox A1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000000964, Mouse)

Protein Percentage 92.79%
CDS Percentage 89.99%
Ka/Ks Ratio 0.0832 (Ka = 0.0338, Ks = 0.4065)

Genome Location

Sequence Coding sequence

Length: 1002 bp    Location: 3509038..3510523   Strand: +
Raw sequence   
>XM_004839522.1
ATGGACAATGCAAGAATGAGCTCCTTTCTGGAATACCCCATCCTTAGCAGTGGCGACTCGGGGACCTGCTCGGCGCGAGCCTACCCCTCTGACCATGGGATTACAACTTTCCAGTCGTGCGCGGTCAGTGCCAACAGCTGCAGCAGCGACGACCGTTTCTTAGTGGGCAGGGGGGTGCAGATCAATTCACCCCACCACCACCACCACCACCATCACCACCCCCAGCCGGCCACTTACCAGACTTCTGGGAACCTGGGGGTGTCCTACTCCCACTCGAACTGTAGTCCAAGCTATAGCGCGCAGAACTTTGGTGCGCCTTACAGCCCCTACGGGTTAAATCAGGAAGCAGACGTAAGTGGCGGGTACCCCCCGTGCGCTCCCGCAGTTTACTCTGGAAATCTCTCATCTCCCATGGTCCAGCATCACCACCACCACCAGGGTTATGCCGGGGGCTCGGTGGGCTCACCTCAATACATTCACCACTCATATGGACAAGAGCACCAGAGCCTGGCCCTGGCTACGTATAATAACTCCTTGTCCCCTCTCCACGCCAGCCACCAAGAAGCTTGTTGCTCCCCTGCATCAGAGTCATCTCCAGCCCAGACCTTTGACTGGATGAAAGTTAAAAGAAACCCTCCCAAAACAGGGAAAGTTGGCGAGTACGGTTATGTGGGTCAACCTAACGCTGTGCGCACCAACTTCACCACCAAACAGCTCACAGAGCTGGAGAAAGAGTTCCACTTCAACAAATACCTGACGCGCGCCCGCAGAGTGGAGATTGCCGCGTCCCTGCAGCTCAATGAGACCCAGGTGAAGATCTGGTTCCAGAATCGAAGAATGAAGCAAAAGAAACGTGAGAAGGAGGGGCTCTTGCCCATCTCACCGGCCACCCCGCCCGGAGGCGAAGAAAAGGCCGAGGAATCTTCAGAGAAATCCAGCTCCTCACCCTGCGTTCCTTCTCCGGGGTCTTCTACCTCAGACACTCTAACTACCTCCCACTGA

Related Sequences

XP_004839579.1 Protein

Hoxa1 PREDICTED: homeobox protein Hox-A1 [Heterocephalus glaber]

Length: 333 aa      
>XP_004839579.1
MDNARMSSFLEYPILSSGDSGTCSARAYPSDHGITTFQSCAVSANSCSSDDRFLVGRGVQINSPHHHHHHHHHPQPATYQTSGNLGVSYSHSNCSPSYSAQNFGAPYSPYGLNQEADVSGGYPPCAPAVYSGNLSSPMVQHHHHHQGYAGGSVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACCSPASESSPAQTFDWMKVKRNPPKTGKVGEYGYVGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGGEEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH