Sequence details NCBI ID: XM_004839520.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hoxa2
Gene Name homeobox A2, transcript variant X1
Entrez Gene ID 101711361

Database interlinks

Part of NW_004624739.1 (Scaffold)

For more information consult the page for NW_004624739.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HOXA2 ENSCPOG00000013499 (Guinea pig)

Gene Details

homeobox A2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012154, Guinea pig)

Protein Percentage 96.77%
CDS Percentage 97.3%
Ka/Ks Ratio 0.29491 (Ka = 0.0181, Ks = 0.0615)

HOXA2 ENSG00000105996 (Human)

Gene Details

homeobox A2

External Links

Gene Match (Ensembl Protein ID: ENSP00000222718, Human)

Protein Percentage 96.23%
CDS Percentage 95.69%
Ka/Ks Ratio 0.17478 (Ka = 0.0219, Ks = 0.1251)

Hoxa2 ENSMUSG00000014704 (Mouse)

Gene Details

homeobox A2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000014848, Mouse)

Protein Percentage 95.68%
CDS Percentage 93.69%
Ka/Ks Ratio 0.10607 (Ka = 0.0235, Ks = 0.2219)

Genome Location

Sequence Coding sequence

Length: 1158 bp    Location: 3501817..3504590   Strand: +
Raw sequence   
>XM_004839520.1
ATGAATTACGAATTTGAGCGAGAGATTGGTTTTATCAATAGCCAGCCGTCGCTCGCTGAGTGCCTGACATCTTTTCCCCCTGTCGCTGATACATTTCAAAGTTCATCAATCAAGACCTCGACGCTTTCACACTCGACACTGATTCCTCCTCCTTTTGAGCAGACCATTCCCAGCCTGAACCCGGGCAGTCACCCTCGCCACGGCGCTGGCGGCCGCCCCAAGCCGAGCCCCGCGGGCAGTCGCGGCAGCCCGGTGCCCGCCGGCGCCCTGCAGCCGCCCGAGTACCCCTGGATGAAGGAGAAGAAGGCGGCCAAGAAAACCGCTCTGCCGCCCGCCGCCGCCGCCACCACCGGCCCTGCCTGCCTCAGCCACAAAGGTCAGTCCAAAGACTTGGCCCCAGGTCCCCCGGACCCCCTTGCCCCTCTGGGCTGCCCTGAGAGCGGCGGCGGGGGATCGCGGCGCCTGAGAACTGCTTACACTAACACCCAGCTTTTAGAGCTGGAAAAAGAATTTCATTTCAACAAGTACCTTTGCAGACCCCGAAGGGTGGAGATTGCAGCGTTGCTGGATTTGACCGAGAGACAAGTGAAAGTGTGGTTTCAGAACCGGAGGATGAAGCACAAGAGGCAGACCCAGTGCAAGGAGAACCAAAACAGCGAAGGGAAATTTAAAAGCCTTGAGGACTCAGAGAAAGTGGAGGAGGACGAGGAAGAGAAGTCACTCTTTGAGCAAGCCCTCAGCGTCTCTGGGGCCCTTCTGGAGAGGGAAGCTTACACTTTTCAGCAAAATGCCCTCTCCCAGCAGCAGGCTCCCAATGGACACAATGGCGACTCCCAAAGTTTCCCAGTTTCGCCTTTAACCAGCAATGAGAAAAATCTGAAACATTTTCAGCACCAGTCACCCACTGTTCCTAACTGCTTGTCAACAATGAGCCAGAACTGTGGAGCTGGCCTAAACAATGACAGTCCCGAGGCCCTCGAGGTCCCTTCTTTGCAGGACTTTAACGTTTTCTCCACAGATTCCTGCCTGCAGCTTTCAGATGCAGTCTCACCGAGTTTGCCAGGTTCCCTCGACAGTCCTGTAGATATTTCAGCTGACAGCTTTGACTTTTTTACAGACACACTCACCACAATCGACTTGCAGCATCTGAATTACTAA

Related Sequences

XP_004839577.1 Protein

Hoxa2 PREDICTED: homeobox protein Hox-A2 isoform X1 [Heterocephalus glaber]

Length: 385 aa      
>XP_004839577.1
MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALPPAAAATTGPACLSHKGQSKDLAPGPPDPLAPLGCPESGGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKFKSLEDSEKVEEDEEEKSLFEQALSVSGALLEREAYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLSTMSQNCGAGLNNDSPEALEVPSLQDFNVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSFDFFTDTLTTIDLQHLNY