Details from NCBI annotation

Gene Symbol Trim54
Gene Name tripartite motif containing 54
Entrez Gene ID 101698305

Database interlinks

Part of NW_004624738.1 (Scaffold)

For more information consult the page for NW_004624738.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRIM54 ENSCPOG00000003839 (Guinea pig)

Gene Details

tripartite motif containing 54

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003465, Guinea pig)

Protein Percentage 96.43%
CDS Percentage 94.23%
Ka/Ks Ratio 0.03278 (Ka = 0.0142, Ks = 0.4338)

TRIM54 ENSG00000138100 (Human)

Gene Details

tripartite motif containing 54

External Links

Gene Match (Ensembl Protein ID: ENSP00000296098, Human)

Protein Percentage 96.09%
CDS Percentage 91.71%
Ka/Ks Ratio 0.02721 (Ka = 0.0164, Ks = 0.602)

Trim54 ENSMUSG00000062077 (Mouse)

Gene Details

tripartite motif-containing 54

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000013771, Mouse)

Protein Percentage 93.99%
CDS Percentage 88.62%
Ka/Ks Ratio 0.02578 (Ka = 0.0275, Ks = 1.0663)

Trim54 ENSRNOG00000006146 (Rat)

Gene Details

tripartite motif-containing 54 (Trim54), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008113, Rat)

Protein Percentage 93.68%
CDS Percentage 88.19%
Ka/Ks Ratio 0.02398 (Ka = 0.0283, Ks = 1.18)

Genome Location

Sequence Coding sequence

Length: 1509 bp    Location: 9372699..9393195   Strand: +
>XM_004839450.1
ATGAACTTCACAGTGGGTTTCAAGCCGCTGCTAGGGGATGCGCACAGCATGGACAACCTGGAGAAGCAGCTCATCTGCCCCATCTGCTTGGAGATGTTCTCCAAGCCCGTGGTGATCCTGCCCTGCCAGCATAACCTGTGCCGCAAGTGTGCCAACGATGTCTTCCAGGCCTCAAATCCACTGTGGCAATCCCGGGGCTCCACTGCGGTGTCTTCGGGAGGCCGTTTCCGCTGCCCATCATGCAGGCATGAGGTTGTCCTGGACAGACATGGTGTCTACGGTCTGCAGCGAAACCTACTGGTGGAGAACATTATCGACATCTACAAGCAGGAGTCCTCACGGCCGCTGCACTCCAAGGCTGAGCAGCACCTCATGTGCGAGGAGCATGAGGACGAGAAGATCAACATCTACTGCCTGACTTGCGAAGTGCCCACCTGCTCCCTCTGCAAGGTCTTCGGTGCCCACAAGGACTGCGAGGTGGCCCCGCTGCCCACCATTTACAAGCGCCAGAAGAGCGAGCTCAGCGACGGCATCGCCATGCTGGTGGCAGGCAACGACCGAGTGCAAGCTGTGATCACACAGATGGAGGAGGTGTGCCAGACCATCGAGGACAACAGCCGAAGGCAGAAGCAGCTGTTAAACCAGAGGTTTGAGACCCTGTGTGCGGTCCTGGAGGAGCGAAAGGGCGAGCTGCTGCAGGCGCTGGCCCGGGAGCAGGAGGAGAAGCTGCAGCACGTCCGCGGCCTCATCCGCCAGTACGGAGACCACCTGGAGGCCTCCTCCAAGCTGGTGGAGTCGGCCATCCAGTCCATGGAAGAGCCGCAGATGGCGCTGTACCTCCAGCAGGCCAAGGAGCTGATCAATAAGGTCGGGACCATGTCGAAGGTGGAACTGGCCGGCCGGCCGGAGCCGGGCTACGAGAGCATGGAGCAGTTCTCCGTGAGCGTGGAGCACGTGGCCGAAATGCTGGGTACCATCGACTTCCAGCCCGGCGCTTCCGGAGAGGACGAGGACGAAGAGGTGGCGCTGGACGGGGACGAGGGCAGCGCGGGGCCCGAGGAAGGGCGGCCCGACGCGCCCGAGGGTGAGAGGGCTGGGGCAGAGCCCGGCTGGAGCACCCGCCGGCACCCGCAGCGCGGCCGCGCTCTTCCCGCCTTCCGCTGCTCTGGGGCTTCGGGGTCCGGGGGCGCCCGCAGGGACCAGAGAAGCCCGAGTGGCTGGGGCGAGCTGTGCGCGGGCTCGGGGCCGCCCGGTTCCTGCAGCGCCCGCCCAGCCGGCCTCCTCTCGCTCGCACAGGGCCGCACTGAGCGACCACCGCCGGGCCGGAGCCGGCGCTCCCCGGGCCGGGCCAGGGTGGCAGAGGACCCGCGCGGAGACCACCCCGCCACCGCCAGCGCGGACCCGGGAGGCCTCAATAAAGCACCCCTCGGCATCCGGGTGCCTCCTGCGCCCCGGGCCCCCAGCTCGCACACAGTTCCCACCCTGGTGTGGTTGCCCTCGCCCCCATGA

Related Sequences

XP_004839507.1 Protein

Trim54 PREDICTED: tripartite motif-containing protein 54 [Heterocephalus glaber]

Length: 502 aa      View alignments
>XP_004839507.1
MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTAVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEDEKINIYCLTCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFETLCAVLEERKGELLQALAREQEEKLQHVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGTMSKVELAGRPEPGYESMEQFSVSVEHVAEMLGTIDFQPGASGEDEDEEVALDGDEGSAGPEEGRPDAPEGERAGAEPGWSTRRHPQRGRALPAFRCSGASGSGGARRDQRSPSGWGELCAGSGPPGSCSARPAGLLSLAQGRTERPPPGRSRRSPGRARVAEDPRGDHPATASADPGGLNKAPLGIRVPPAPRAPSSHTVPTLVWLPSPP