Sequence details NCBI ID: XM_004839343.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Slc8a1
Gene Name solute carrier family 8 (sodium/calcium exchanger), member 1, transcript variant X2
Entrez Gene ID 101711105

Database interlinks

Part of NW_004624738.1 (Scaffold)

For more information consult the page for NW_004624738.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SLC8A1 ENSCPOG00000002233 (Guinea pig)

Gene Details

Cavia porcellus solute carrier family 8 (sodium/calcium exchanger), member 1 (Slc8a1), mRNA.

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002023, Guinea pig)

Protein Percentage 98.66%
CDS Percentage 95.02%
Ka/Ks Ratio 0.03538 (Ka = 0.0065, Ks = 0.1829)

SLC8A1 ENSG00000183023 (Human)

Gene Details

solute carrier family 8 (sodium/calcium exchanger), member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000384763, Human)

Protein Percentage 97.63%
CDS Percentage 93.78%
Ka/Ks Ratio 0.04827 (Ka = 0.0116, Ks = 0.241)

Slc8a1 ENSMUSG00000054640 (Mouse)

Gene Details

solute carrier family 8 (sodium/calcium exchanger), member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000083725, Mouse)

Protein Percentage 95.15%
CDS Percentage 89.45%
Ka/Ks Ratio 0.05615 (Ka = 0.0251, Ks = 0.4462)

Slc8a1 ENSRNOG00000008479 (Rat)

Gene Details

solute carrier family 8 (sodium/calcium exchanger), member 1 (Slc8a1), transcript variant 9, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000040751, Rat)

Protein Percentage 94.64%
CDS Percentage 88.93%
Ka/Ks Ratio 0.06374 (Ka = 0.0298, Ks = 0.4669)

Genome Location

Sequence Coding sequence

Length: 3018 bp    Location: 21958695..21648554   Strand: -
Raw sequence   
>XM_004839343.1
ATGCTGCGATTAAATCTCTCACCCACGTTTTCACTGGGGTTTCATCTGCTAGCTATGATGGCTCTCCTAATTTCCCATGTGGATCATATAACTGCTGAGACAGAAATGGTGGAAGAAGGAAATGAAACCGGTGAATGTACTGGCTCCTATTACTGTAAGAAAGGGGTGATTTTGCCCATTTGGGAGCCCCAAGACCCTTCTTTTGGGGACAAAATTGCTAGAGCAACTGTGTATTTTGTGGCCATGGTCTACATGTTTCTTGGCGTCTCTATCATAGCTGACAGGTTCATGTCCTCCATCGAAGTCATCACATCGCAAGAAAAAGAAATAACCATAAAGAAACCCAATGGAGAGACCACCAAGACAACTGTGAGGATCTGGAATGAGACCGTGTCTAACCTGACCTTGATGGCCCTGGGATCCTCTGCTCCTGAAATTCTCCTTTCAGTAATTGAAGTGTGTGGCCATAACTTCACTGCAGGAGACCTTGGTCCTAGCACCATTGTGGGAAGCGCTGCCTTCAACATGTTTATCATCATTGCCCTTTGTGTTTATGTGGTCCCTGATGGAGAAACAAGGAAGATTAAGCATTTGCGTGTGTTCTTTGTGACAGCAGCCTGGAGCATCTTTGCCTATACCTGGCTTTATATCATTTTGTCTGTCATTTCTCCTGGAGTTGTGGAGGTCTGGGAAGGTTTGCTTACTTTCTTTTTCTTCCCCATCTGTGTTGTGTTCGCATGGGTAGCAGACAGGAGACTTCTGTTTTACAAGTATGTCTACAAGCGCTATCGGGCTGGCAAACAGAGGGGAATGATTATAGAACATGAAGGTGACAGGCCATCTTCCAAAACTGAAATCGAAATGGATGGGAAAGTAGTCAACTCTCACGTTGAAAATTTCTTAGATGGTGCTCTGGTTCTGGAGGTTGATGAGAGGGACCAAGATGATGAAGAAGCTAGGAGAGAAATGGCAAGGATTCTGAAGGAACTTAAGCAGAAGCACCCAGAGAAGGAAATAGAGCAATTAATAGAATTAGCTAACTACCAAGTCTTAAGTCAGCAGCAAAAGAGTAGAGCATTTTACCGAATTCAAGCTACTCGCCTGATGACTGGCGCTGGCAATATTTTAAAGAGGCATGCAGCTGACCAAGCTAGGAAGGCTGTCAGTATGCATGAGGTCAACACAGAAGTGGCTGACAATGACCCCGTTAGTAAGATCTTCTTTGAGCAAGGGACATACCAGTGTCTGGAGAACTGTGGTACAGTGGCCCTGACCATTATCCGTAGAGGTGGCGATCTGACCAACACTGTGTTTGTTGACTTCAGAACAGAGGATGGCACAGCCAATGCCGGGTCTGATTATGAATTTACTGAAGGAACTGTGGTCTTTAAACCTGGTGAGACACAAAAGGAAATCAGAGTTGGCATCATTGATGATGATATCTTTGAGGAGGATGAAAATTTCCTTGTGCATCTGAGCAATGTCAAAGTATCTTCTGAGGCTTCAGAAGATGGCATACTGGAAGCCAACCATGTTTCTACCCTTGCTTGCCTTGGATCACCCTGCACTGCCACTGTTACTATTTTTGATGATGACCATGCAGGCATCTTTACTTTTGAGGAACCCGTGACCCACGTGAGTGAAAGCATTGGCATCATGGAGGTGAAAGTATTGAGAACATCTGGAGCTCGAGGAAATGTTATTGTTCCCTATAAAACCATCGAAGGAACTGCCAGAGGTGGAGGGGAGGACTTTGAGGACACCTGTGGAGAGCTCGAATTCCAGAACGATGAAATTGTCAAAACAGTATCAGTCAAGGTAATTGATGATGAGGAGTATGAGAAAAACAAGACCTTCTTCCTTGAGATCGGAGAGCCCCGCCTGGTGGAGATGAGTGAGAAGAAAGGTGGGATCATTACCATTAGAATATTTGACCGTGAGGAATATGAGAAAGAGTGCAGTTTCTCCCTTGTGCTTGAGGAACCAAAATGGATAAGAAGAGGAATGAAAGCCCTGCTATTGAATGAGCTTGGTGGCTTCACAATAACAGGAGAATATCTGTATGGCCAACCTGTCTTCAGGAAAGTTCATGCTAGAGAACATCCGATTCCCTCTACTGTAATCACCATTGCAGATGAATATGATGACAAACAGCCGCTAACCAGCAAAGAGGAAGAGGAGAGGCGCATTGCAGAACTGGGGCGCCCCATCCTGGGAGAACACACCAAGCTGGAAGTGATCATTGAGGAGTCCTATGAATTCAAGAGTACGGTGGACAAACTCATTAAGAAGACAAACCTGGCCCTTGTGGTGGGTACCAACAGCTGGAGAGAACAGTTCATTGAGGCTATCACTGTCAGTGCTGGGGAAGATGATGACGACGATGAATGTGGGGAGGAGAAGTTGCCCTCCTGTTTTGATTATGTGATGCACTTTCTGACTGTCTTCTGGAAGGTCCTGTTTGCCTTCGTACCCCCTACAGAATACTGGAATGGCTGGGCATGTTTCATTGTCTCCATTCTCATGATTGGCCTACTGACAGCTTTCATTGGAGACCTGGCTTCCCACTTTGGCTGCACCATTGGCCTAAAAGACTCCGTGACTGCTGTTGTGTTCGTCGCACTGGGAACTTCAGTGCCAGACACATTTGCCAGCAAAGTGGCAGCCACCCAGGACCAGTATGCAGACGCATCCATAGGTAACGTCACAGGCAGCAACGCGGTGAACGTCTTCCTGGGGATCGGCGTGGCCTGGTCCATTGCTGCCATCTACCATGCAGCCAATGGGGAACAGTTCAAAGTGTCCCCTGGCACATTAGCTTTCTCTGTCACTCTCTTCACCATTTTCGCTTTCATCAATGTGGGGGTGCTGCTGTATCGGCGGAGGCCAGAAATCGGAGGTGAGCTGGGTGGGCCCCGGACTGCCAAGCTCCTCACATCCTCCCTCTTTGTGCTCCTATGGCTCTTGTACATTTTCTTCTCTTCCCTGGAGGCCTACTGCCACATAAAAGGCTTCTAA

Related Sequences

XP_004839400.1 Protein

Slc8a1 PREDICTED: sodium/calcium exchanger 1 isoform X2 [Heterocephalus glaber]

Length: 1005 aa      View alignments
>XP_004839400.1
MLRLNLSPTFSLGFHLLAMMALLISHVDHITAETEMVEEGNETGECTGSYYCKKGVILPIWEPQDPSFGDKIARATVYFVAMVYMFLGVSIIADRFMSSIEVITSQEKEITIKKPNGETTKTTVRIWNETVSNLTLMALGSSAPEILLSVIEVCGHNFTAGDLGPSTIVGSAAFNMFIIIALCVYVVPDGETRKIKHLRVFFVTAAWSIFAYTWLYIILSVISPGVVEVWEGLLTFFFFPICVVFAWVADRRLLFYKYVYKRYRAGKQRGMIIEHEGDRPSSKTEIEMDGKVVNSHVENFLDGALVLEVDERDQDDEEARREMARILKELKQKHPEKEIEQLIELANYQVLSQQQKSRAFYRIQATRLMTGAGNILKRHAADQARKAVSMHEVNTEVADNDPVSKIFFEQGTYQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKEIRVGIIDDDIFEEDENFLVHLSNVKVSSEASEDGILEANHVSTLACLGSPCTATVTIFDDDHAGIFTFEEPVTHVSESIGIMEVKVLRTSGARGNVIVPYKTIEGTARGGGEDFEDTCGELEFQNDEIVKTVSVKVIDDEEYEKNKTFFLEIGEPRLVEMSEKKGGIITIRIFDREEYEKECSFSLVLEEPKWIRRGMKALLLNELGGFTITGEYLYGQPVFRKVHAREHPIPSTVITIADEYDDKQPLTSKEEEERRIAELGRPILGEHTKLEVIIEESYEFKSTVDKLIKKTNLALVVGTNSWREQFIEAITVSAGEDDDDDECGEEKLPSCFDYVMHFLTVFWKVLFAFVPPTEYWNGWACFIVSILMIGLLTAFIGDLASHFGCTIGLKDSVTAVVFVALGTSVPDTFASKVAATQDQYADASIGNVTGSNAVNVFLGIGVAWSIAAIYHAANGEQFKVSPGTLAFSVTLFTIFAFINVGVLLYRRRPEIGGELGGPRTAKLLTSSLFVLLWLLYIFFSSLEAYCHIKGF