Details from NCBI annotation

Gene Symbol Capn13
Gene Name calpain 13
Entrez Gene ID 101706183

Database interlinks

Part of NW_004624738.1 (Scaffold)

For more information consult the page for NW_004624738.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CAPN13 ENSCPOG00000004800 (Guinea pig)

Gene Details

calpain 13

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004320, Guinea pig)

Protein Percentage 81.08%
CDS Percentage 87.59%
Ka/Ks Ratio 0.45009 (Ka = 0.1089, Ks = 0.2419)

CAPN13 ENSG00000162949 (Human)

Gene Details

calpain 13

External Links

Gene Match (Ensembl Protein ID: ENSP00000295055, Human)

Protein Percentage 69.62%
CDS Percentage 78.3%
Ka/Ks Ratio 0.39755 (Ka = 0.2018, Ks = 0.5075)

Capn13 ENSMUSG00000043705 (Mouse)

Gene Details

calpain 13

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000092832, Mouse)

Protein Percentage 73.23%
CDS Percentage 78.7%
Ka/Ks Ratio 0.26425 (Ka = 0.1695, Ks = 0.6413)

Capn13 ENSRNOG00000032375 (Rat)

Gene Details

calpain 13 (Capn13), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000039021, Rat)

Protein Percentage 73.16%
CDS Percentage 78.76%
Ka/Ks Ratio 0.27118 (Ka = 0.1711, Ks = 0.6308)

Genome Location

Sequence Coding sequence

Length: 2010 bp    Location: 12655225..12583303   Strand: -
>XM_004839253.1
ATGGCACAGAACCCAGAGCTTCTAGCAGAGACCTCCGTCATCAAGTTCAAGGGTCAGGACTTTAACTCTTTGCGGGACCATTGCCTAAACACGGGGAAGCCATTTACGGATGAGATGTTCCCTGCTGAACCTTGTTCCATAGGCCAGAAGCTGCTCACAGGAAAAAACCTTTCCATCCTGAAGTGGATGCGGCCACGGCAGCAAGATTCACCTTATGGTCCACCTCACTTTATCCTGGAAGGTACAAGTAGATTTGACATCCAACAAGGAAGAGCAGGGGACTGCTGGTTCCTGGCAGCGCTGGGCTCCTTGACCCAGAACCCTCAGTGTCTGCAGAAGATCCTGATGGACCAAAGTTTTTCACACCAGTATGCCGGGATTTTCCATTTTCAGTTCTGGCAGTGTGGTCAGTGGGTGGACGTGGTGATTGATGACCGCTTGCCTGTTGTGGGCAAGGAATGCCTCTTTGTGCATCCTCGAAAAGACAACCAAGAGTTCTGGCCCTGCCTGCTGGAGAAAGCCTATGCCAAACTTCAGGGATCCTATTCTCACCTGCACTACGGCTACCTCCCTGACGCCCTGGTGGACCTCACAGGAGGGGTGGTCACCACTGCCAACCTGCATGCCTCTCCTTCCAGCCTGCTGATGATGGTGAAGACGGCAGCCGAGGCTGGCTCCCTGATGGCCTGTGCCACCCCCCCGGGGCCAACAGACAGGTCCGAGGTGATGCAGAACGGGCTGGTGAGCCAGCACGCCTATACGGTGACGGGCGCTGAGCAGATTCAGTCCGGGACAGGCTGGGACAAGATCATCCGCCTGTGGAACCCATGGGGCAAGACAGAGTGGAGAGGGCGCTGGAAAGATGGGTCCCGGGAATGGCAAGAAACCCAAGACCCACGGAAAAAGCAATTGTACCACATCAAGGAAGATGGCGAGTTTTGGATGTCATGTCAAGATTTCCAAGAGAACTTCTCCTCCTTGTTCATATGTAACCAAGTCCCAATTACTTTGGACCGTGGAATCAGGCCCCAGGAAAGATGGCACCGAATGATATTTAGGAACCAAGTGATTCTCAGGAACAGTGCAAGAGAACCCAGGAGGAATCCTTATTACCTCTTCAGTGTGCAAGAGTCCCAAGGAGGCAACAATGTTGTTGTGTCCTTCACTGTCATGCCACAACTCCTGAAGGCAGAAGAGAAGGGATTTCCCTTGAGTTTCCAGGTGTTTAAGGTAAGGCAGTTTCAGCAATTCCAGGAGAGATTGCCGCCCACGTTCTTTTCTCCATTTAGAAATGCTGCCCAGGGCATAGATTATGAAACCAAGTGCAACTTCATGAAATCTTTCCATCTCAACCCTGGGACCTATGTTGTGGTCCCCTCAGCACATAGAAAAGAAGCTAAGTTCTTGCTCCGAATCTTCCTGAAAATGCCAGACAGTGACAGGAACCCGGGCAGCAGTTTCAAGCTCAGAGCACTGGAGGAAACTCTTTCAGAAAATGGCTCTGAACAAAGCATTTTCTACAGATATGCGCCAAAGGGGCTGGACATTGATGCTACTCAACTTCAGAGCCTTCTCAACCAGGAGCTCCTGACAGGACCTCCAGGGGACACTTTCTCCTTGGACGAGTGCCGCAGTATTGTGGCTCTGATGGATCTAGAGGTGAATGGGCGGCTTGACCAGGAGGAGTTTGCCAGACTGTGGAGGCGTCTTGTCCACTTCCAGCATGTTTTCCAGAACATCCAGCAAAGCTCTGGAGTCCTCTTGAGCTCAGACTTGAGCAAGGCCATAGAGAGCACAGACTTCCTTACAGGCATCTCCATCAGCAGTGAGCTGCTGGGTCTCATGACCCTTCGCTACAGTGACAGCGCTGGTCAGGTCAGCTTCCCCAGCCTGGTCTGCTTCCTGATGCGGCTGGAAGCCATGACAAAGACATTCCATAATCTCTCCAAGGACGGAAAAGGACTCTACCTGACGGAAATGGAGTGGATGAACTTTGTCATGTACAACTGA

Related Sequences

XP_004839310.1 Protein

Capn13 PREDICTED: calpain-13 [Heterocephalus glaber]

Length: 669 aa      View alignments
>XP_004839310.1
MAQNPELLAETSVIKFKGQDFNSLRDHCLNTGKPFTDEMFPAEPCSIGQKLLTGKNLSILKWMRPRQQDSPYGPPHFILEGTSRFDIQQGRAGDCWFLAALGSLTQNPQCLQKILMDQSFSHQYAGIFHFQFWQCGQWVDVVIDDRLPVVGKECLFVHPRKDNQEFWPCLLEKAYAKLQGSYSHLHYGYLPDALVDLTGGVVTTANLHASPSSLLMMVKTAAEAGSLMACATPPGPTDRSEVMQNGLVSQHAYTVTGAEQIQSGTGWDKIIRLWNPWGKTEWRGRWKDGSREWQETQDPRKKQLYHIKEDGEFWMSCQDFQENFSSLFICNQVPITLDRGIRPQERWHRMIFRNQVILRNSAREPRRNPYYLFSVQESQGGNNVVVSFTVMPQLLKAEEKGFPLSFQVFKVRQFQQFQERLPPTFFSPFRNAAQGIDYETKCNFMKSFHLNPGTYVVVPSAHRKEAKFLLRIFLKMPDSDRNPGSSFKLRALEETLSENGSEQSIFYRYAPKGLDIDATQLQSLLNQELLTGPPGDTFSLDECRSIVALMDLEVNGRLDQEEFARLWRRLVHFQHVFQNIQQSSGVLLSSDLSKAIESTDFLTGISISSELLGLMTLRYSDSAGQVSFPSLVCFLMRLEAMTKTFHNLSKDGKGLYLTEMEWMNFVMYN