Sequence details NCBI ID: XM_004839191.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Gtf3c2
Gene Name general transcription factor IIIC, polypeptide 2, beta 110kDa, transcript variant X2
Entrez Gene ID 101713285

Database interlinks

Part of NW_004624738.1 (Scaffold)

For more information consult the page for NW_004624738.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

GTF3C2 ENSCPOG00000003840 (Guinea pig)

Gene Details

general transcription factor IIIC, polypeptide 2, beta 110kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003466, Guinea pig)

Protein Percentage 96.04%
CDS Percentage 94.65%
Ka/Ks Ratio 0.14081 (Ka = 0.0207, Ks = 0.1469)

GTF3C2 ENSG00000115207 (Human)

Gene Details

general transcription factor IIIC, polypeptide 2, beta 110kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000352536, Human)

Protein Percentage 89.78%
CDS Percentage 90.77%
Ka/Ks Ratio 0.24157 (Ka = 0.0541, Ks = 0.224)

Gtf3c2 ENSMUSG00000029144 (Mouse)

Gene Details

general transcription factor IIIC, polypeptide 2, beta

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000085325, Mouse)

Protein Percentage 88.41%
CDS Percentage 87.56%
Ka/Ks Ratio 0.17857 (Ka = 0.0643, Ks = 0.36)

Gtf3c2 ENSRNOG00000005938 (Rat)

Gene Details

general transcription factor 3C polypeptide 2

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000057753, Rat)

Protein Percentage 84.91%
CDS Percentage 84.62%
Ka/Ks Ratio 0.22365 (Ka = 0.0954, Ks = 0.4267)

Genome Location

Sequence Coding sequence

Length: 2733 bp    Location: 9435065..9410927   Strand: -
Raw sequence   
>XM_004839191.1
ATGGATACCTGCGGGGTCGGCTGTGTTGCCCTAGGGGAGGCCGGCCCCGTGGGAAACATGACTGTGGTAGACTCTCCGGGACATGAACTGCTAAACCAGCTTGGTGTCAAGGCCCCCTCAGAAACAACCAGAGTGGAGGCCTCCATAGAGATGTCACTACCTACCCCTTTGCCTGGATTCGAGGACTCTCCTGATAAGAGGAACCTTCCTCTAGAGCAGGAAAGCCTCTCCAGATTGGAACAGCAAGATCTTTCTTCAGAGATGTCAAAGGTCTCAAACCCTAGGGCCTCAAAGCCTGCCCGGAAGAGAGGTAGTAGGACACGGAAAGGCCCCAAAAGGCCCCAACAGCGTAAAGCTCCATCAGCCCCTTTGGTTCCTGGTCTCTTAGATCAATCCAACCCTCTATCTACCCCCATGCCTAAGAAACGAAGTCAAAAGTCCAAGGGAGACCTGCTCCTGCTGAAGTTGTCCAAAGGCCTAGATCAGCCAGAGTCTCCACCTTCAAAGAGGCCCCCTGAGGACTTTGAGACCCCTCCTGGGGAACGACCCCGCCGAAGGGCTGCCCAAGTGGCCCTTGTGTATCTTCAGGAACTGGCTGAAGAGCTTTCTTCAACCCTGCCAGCCCCAGTGACCTGTCCCAAGAGCCCCAAGGCAAGCAGCCCCACCAAACTAAAGAAGACCCCTCAGGAGGCAGCCTGTCAGGGTGGAGAAGAGGATGCTACTCCACAGGATGAAGACTTTGTTCTCCAGGTTGAGGCTGAAGATGGGGCAGAAAGCGAGGTCCCAAGTGAGGGCTTATCTGATCCCGAGCCTCCAGTGCCACGAAGCACCCCACGAGGATCCACTTCAGGGAAGCAGAAGCCACACTGCCGGGGAGTGGCTCCCAATGGCTTACCCAACTACATCATGGCCCCTGTCTGGAAGTGCCTCCATCTCACCAAGGACCTCCGAGAACAGAAGCATTCTTTGTGGGAGTTTGCTGAATGGATTCCTCTAGCCTGGAAGTGGCACTTGTTATCTGAGCTTGAAGCAGCTCCCTACCTGCCCCAGGAGGAGAAGTCTCCACTGTTTTCTGTACAACGTGAAGGCCTTTCTGAGGATGGCACACTGTACCGAATAAACAGATTTAGCTCAGTCACAGCACATCCAGAACGCTGGGATGTGTCCTTCTTCACTGGGGGTCCGCTGTGGGCTCTGGACTGGTGCCCAGTGCCAGAGGGGTCAGCAGCCTCGCAGTATGTCGCCCTTTTCTCGAGCCCTGACATGAATGAGACACACCCACTGAGCCAACTTCACTCTGGCCCCGGGCTGCTGCAGCTCTGGGGCCTTGGGACCTTGCAGCCAGAAAGCTGTTCTGGCAACAGGGCCCACTTTGTCTATGGAATTGCCTGTGACCATGGCTGTATCTGGGACCTCAAGTTCTGCCCCAGTGGAGCGTGGGAACTTCCAAGCACCCTTCGGAAGGCTCCTCTCCTGCCCCGGTTGGGTCTCTTGGCTCTCGCATGCTCTGATGGGAAGGTGCTGCTGTTCAGTCTGCCACATCCTGAGGCCCTGTTGGCTCAGCAGCCCCCGGATGCGATGAAGCCTGCCATCTATAAGGTACAGTGTGTGGCAACCCTGCAGGTGGGGTCTGTGCAAGCTTCAGACCCCTCTGAATGTGGTCAGTGCCTTAGCCTGGCCTGGATGCCTACCAGGCCCCACCACCATCTGGCCGCTGGATACTATAATGGCATGGTGGTTTTCTGGAACCTTCCCAGTAATTCACCGCTGCTGCGCATACGGCTCTCGGATGGTTCCTTAAAGCTCTACCCCTTCCAGTGTTTCCTAGCCCATGACCAGGCGGTGCGTACACTTCAGTGGTGCAAAGCTAACAGTCATTTCCTAGTCTCTGCGGGGAGTGACCGGAAAATCAAATTCTGGGACCTTCGGCGACCTTATGAACCAATAAACTCTATCAAGCGCTTTTTGAGTACAGAACTGGCCTGGCTGCTGCCCTACAACGGTGTCACTGTGGCTCAAGACAACTGCTATGCCTCTTATGGACTCTGTGGAATTCATTATATTGATGCTGGTTACCTTGGTTTCAAGGCCTACTTCACTGCTCCTCGAAAAGGCACTGTCTGGAGTCTTTCAGGATCTGACTGGCTTGGGACAATAGCTGCAGGAGATATATCTGGGGAGCTCATTGCAGCTATATTGCCTGACATGGCATCGAACCCAATAAATGTCAAGCGACCAGCAGAGCGAAGATTCCCTGTATATAAGGCAGATCTGGTCCCATATCAGGACAATCCTGAAGGTCAAGATCATTCTTCTGCTTCATCTGGGGCCCCTGACCCTCCCAAGGCTCGAACATATGCTGAAACTGTCAACCATCATTACTTGCTCTTTCAAGACACAGATCTGGGTTCCTTTCACAATCTGCTCCATAGAGAACCAATGCTGCGCATGCAGGAGGGAGAAGGACATTCTCAGCTCTGCCTGGACAGGCTGCAGCTCGAGGCTATTCATAAGGTACGTTTCAGCCCAAACCTGGACTCCTATGGATGGCTGGTATCTGGGGGGCAGTCAGGGCTGGTTCGGATCCATTTCATCCGTGGACTCACCTCCCCACTGGGTCACCGTATGCAGCTTGAAAGTCAAGCCCACTTCAGTGCTATGTTCCAACCATCCTCCCCAACTAAAGGGCCCGGCTTCCCTCCAGCCAGCCATCGCCTTCTGTCCAGTCCCTAG

Related Sequences

XP_004839248.1 Protein

Gtf3c2 PREDICTED: general transcription factor 3C polypeptide 2 isoform X2 [Heterocephalus glaber]

Length: 910 aa      View alignments
>XP_004839248.1
MDTCGVGCVALGEAGPVGNMTVVDSPGHELLNQLGVKAPSETTRVEASIEMSLPTPLPGFEDSPDKRNLPLEQESLSRLEQQDLSSEMSKVSNPRASKPARKRGSRTRKGPKRPQQRKAPSAPLVPGLLDQSNPLSTPMPKKRSQKSKGDLLLLKLSKGLDQPESPPSKRPPEDFETPPGERPRRRAAQVALVYLQELAEELSSTLPAPVTCPKSPKASSPTKLKKTPQEAACQGGEEDATPQDEDFVLQVEAEDGAESEVPSEGLSDPEPPVPRSTPRGSTSGKQKPHCRGVAPNGLPNYIMAPVWKCLHLTKDLREQKHSLWEFAEWIPLAWKWHLLSELEAAPYLPQEEKSPLFSVQREGLSEDGTLYRINRFSSVTAHPERWDVSFFTGGPLWALDWCPVPEGSAASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQPESCSGNRAHFVYGIACDHGCIWDLKFCPSGAWELPSTLRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPDAMKPAIYKVQCVATLQVGSVQASDPSECGQCLSLAWMPTRPHHHLAAGYYNGMVVFWNLPSNSPLLRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANSHFLVSAGSDRKIKFWDLRRPYEPINSIKRFLSTELAWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTIAAGDISGELIAAILPDMASNPINVKRPAERRFPVYKADLVPYQDNPEGQDHSSASSGAPDPPKARTYAETVNHHYLLFQDTDLGSFHNLLHREPMLRMQEGEGHSQLCLDRLQLEAIHKVRFSPNLDSYGWLVSGGQSGLVRIHFIRGLTSPLGHRMQLESQAHFSAMFQPSSPTKGPGFPPASHRLLSSP