Sequence details NCBI ID: XM_004839026.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Gen1
Gene Name GEN1 Holliday junction 5' flap endonuclease, transcript variant X3
Entrez Gene ID 101716898

Database interlinks

Part of NW_004624738.1 (Scaffold)

For more information consult the page for NW_004624738.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

GEN1 ENSCPOG00000003059 (Guinea pig)

Gene Details

GEN1 Holliday junction 5' flap endonuclease

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002769, Guinea pig)

Protein Percentage 73.75%
CDS Percentage 82.91%
Ka/Ks Ratio 0.46388 (Ka = 0.1596, Ks = 0.3441)

GEN1 ENSG00000178295 (Human)

Gene Details

GEN1 Holliday junction 5' flap endonuclease

External Links

Gene Match (Ensembl Protein ID: ENSP00000370653, Human)

Protein Percentage 74.7%
CDS Percentage 83.24%
Ka/Ks Ratio 0.37332 (Ka = 0.1472, Ks = 0.3943)

Gen1 ENSMUSG00000051235 (Mouse)

Gene Details

Gen homolog 1, endonuclease (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000132098, Mouse)

Protein Percentage 66.18%
CDS Percentage 77.64%
Ka/Ks Ratio 0.38462 (Ka = 0.2105, Ks = 0.5472)

Gen1 ENSRNOG00000004667 (Rat)

Gene Details

GEN1 Holliday junction 5' flap endonuclease (Gen1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000006470, Rat)

Protein Percentage 67.19%
CDS Percentage 78.01%
Ka/Ks Ratio 0.3847 (Ka = 0.2068, Ks = 0.5374)

Genome Location

Sequence Coding sequence

Length: 2733 bp    Location: 689847..718549   Strand: +
Raw sequence   
>XM_004839026.1
ATGGGAGTGAATGGCTTGTGGCAAATTTTGGAGCCTGTGAAGCAACACGTCCACCTCCGGAGTCTTAGTGGGCAAACCATTGCGGTTGACCTGAGTGTCTGGGTGTGTGAGGCACAGTCTGTTAGGAAAATGGTGGGGACTGTGACGAAGCCCCACCTCAGGAACTTATTTTTTCGTGTCTCCCATTTAATGCAAATGGATATAAGACTGGTGTTTGTTATGGAGGGGGAACCAGCAAAGCTGAAAGCTGGTGTCATGAGCAAGAGGAATCAGATGCGGTACGGGCCTTCTGGGAAAACAGGGTCTCAGAGAACAGGAAGGTCACGTTTTAAGTTGGTCTTACGAGAGTGCCTTGAAATGCTGGAGTGCCTAGGCGTGCCCTGGGTGCAAGCAGCAGGGGAAGCTGAGGCCATGTGCGCTCACCTCAATGGCACTGGCCGTGCTGACGGCTGCCTCACGGACGACGGCGATGCTTTCCTCTACGGGGCCCAGACGGTGTACAGGAATTTCACCATGAATGCACAGGACCCACATGTTGACTGTTATACCATGTCATCTATCAAGAATAAACTAGGCTTGGACAGAGATGCTCTGGTTGGATTAGCCATACTTCTTGGATGTGATTACCTTCCAAAGGGAGTTCCTGGAGTTGGAAAAGAGCAAGCACTAACACTTATACAGATTTTGAAAGGGGAAAGTTTGCTTCAGAGGTTTAATCAGTGGAATGAAAAGTCTTGCCATTCTGTTCCGCAGCCAGAAGCAGCTGAACTGGCCCATTGCTCTGTGTGTTCCCATCCAGGTTCACTGAAGGATCATGAACGTAATGGTTGCCAGTTATGTAAAAGTAGTAGATACTGTGAACCACATGATTATGAATACTGCTGTCCTTGCGAATGGCATCAGACAAAACATGATAGGCAACTAATCGGAGTAGAGAACAATATTAAGAAGAAGGCTTGCAGTTGTGAGGGATTCCCATTCCATGAGGTTATTCAAGAATTCCTTTTGAACAAGGATAAATTGGTGAGGGTAATAAGATACCAAAGACCTGATTTATTATTGTTTCAGAGATTTACTCTTGAAAAAATGGAGTGGCCCAATCACTATGCATGTAAGAAACTGTTGGTGCTTTTGACCCGCTATGACATGATGGAAAGAAAACTCGGCAGAAAGAACTCCGACCAACTGCAACCAATTCGAATTGTTAAGCCCCGAATCAGAAATGGAGTTCATTGCTTTGAAATAGAATGGGAAATGCCTGAACATTTTGCTGTAGAAGATGGAGAACATGGAGAACTGATTCTAACAGTTGAAGAAGAATCGTTGTTTGAAGCAGCTTATCCTGAGATTGTTGCCATTTACCAAAACCAAAATTTAGAAGCTAAAGGGAGGAAGCAAAACAATATGAAAATTAAGCCTAAAGAAGACAATTTCCCAGAACCATATGATGTAATGAATTTTCAGTCACTTGTGACTTTAAAACCCACACCTGAAATCTTTCCTAAGCTGAATTCCAAGTTAAACTTGGAAATTTCTTCTGATCCCGTATTACCACAGGAAAATATTTCTGCCTCGTTGACTAGCTTGCTTTTACCTGAAGATGCTCCCTGTTTAAATATGCAAGAAGAGTTAATGTCTTCAAGACCTTTGCTTAGTCGGCAAATTAAAGGTGCAAGTAACTCTCTCAATTTGGAATCTGGTCAACCCAATCCTTTATTTCATGATATATCTATGATTACTGATTTACACTTGAGCTCCATTGACTGGGAAGGGACTTCTTTTAGTAATGACTCAGCTGTTCAAGGGAAAGCTGTCTCTTATGATTTACAGTCTGAACTTGAATCAAAGCTATTAGTCACCCCTGGTGATTTTGAAAATATCCCAGAACAGTTGTCATGTGAATCAGGACGGTGGACCACAAACATTAATAAATTGTCACATGGGCATCTTCAGAAGGTTAGTCCTGAAGAACATCTACTTTCTGGCATTAGTGATTTATGTCTTCAGGATTTGCCTTTAAAAGAACGTATATATATGAAATCATCATATCCAGAGAATAATGTACAATCAGATGTTGACCTGAAAACTTTGTCCCTACAAAAGATAAAAGAATCTTATATTGCTAATAGTAGATCTGATTGTCCGTCACATCTTTCAAAGGATCTTCCTGGAATTAATTTGCAAAATGAATCCAGAAACGCTAAAGTTATAAAAGGAGACCAGCTGCATCAAGAAAACTCTAAAGTGAATACTTCTGTACTTTATTCTGTCAATAGTAGTAAAATAGTAAAGACCTCCAATGTTAGAGCTGGGCCACCAAATACTTTTTTAGGTCATAGTGGAAAAGTTAATATGCACACCATTCAGAAACTTGTCAAGAAGAATAGTACTTGCCTTGACAGACATTCCTCTGATGAAGAAAGTGGTCCAGTATTTGGTAAAGTGAAGAACACGACTCGAAAAATGAAACATAGTTCACAGAAGAATGACTTAGCCCAATTTAAAGAAAGTGACCACAACAAACAGAGGAACCCTCCAATCCATGCCAAAGAAACTAAATCGAGTGTTAAGTCTTACAAAACAACTGGAAATGAAGAAAAACATTTCTCAGACCCAGCAAAAACTTCTCTGGGTTTTCTACAGTGTCATAAGAAAGACGATGGCCTTGGTACTTGTTTGGATAGTCCCCTTCCTTTATCCCAGAGATTAAAACTAAGGTTCCAGAACACTTGA

Related Sequences

XP_004839083.1 Protein

Gen1 PREDICTED: flap endonuclease GEN homolog 1 isoform X3 [Heterocephalus glaber]

Length: 910 aa      View alignments
>XP_004839083.1
MGVNGLWQILEPVKQHVHLRSLSGQTIAVDLSVWVCEAQSVRKMVGTVTKPHLRNLFFRVSHLMQMDIRLVFVMEGEPAKLKAGVMSKRNQMRYGPSGKTGSQRTGRSRFKLVLRECLEMLECLGVPWVQAAGEAEAMCAHLNGTGRADGCLTDDGDAFLYGAQTVYRNFTMNAQDPHVDCYTMSSIKNKLGLDRDALVGLAILLGCDYLPKGVPGVGKEQALTLIQILKGESLLQRFNQWNEKSCHSVPQPEAAELAHCSVCSHPGSLKDHERNGCQLCKSSRYCEPHDYEYCCPCEWHQTKHDRQLIGVENNIKKKACSCEGFPFHEVIQEFLLNKDKLVRVIRYQRPDLLLFQRFTLEKMEWPNHYACKKLLVLLTRYDMMERKLGRKNSDQLQPIRIVKPRIRNGVHCFEIEWEMPEHFAVEDGEHGELILTVEEESLFEAAYPEIVAIYQNQNLEAKGRKQNNMKIKPKEDNFPEPYDVMNFQSLVTLKPTPEIFPKLNSKLNLEISSDPVLPQENISASLTSLLLPEDAPCLNMQEELMSSRPLLSRQIKGASNSLNLESGQPNPLFHDISMITDLHLSSIDWEGTSFSNDSAVQGKAVSYDLQSELESKLLVTPGDFENIPEQLSCESGRWTTNINKLSHGHLQKVSPEEHLLSGISDLCLQDLPLKERIYMKSSYPENNVQSDVDLKTLSLQKIKESYIANSRSDCPSHLSKDLPGINLQNESRNAKVIKGDQLHQENSKVNTSVLYSVNSSKIVKTSNVRAGPPNTFLGHSGKVNMHTIQKLVKKNSTCLDRHSSDEESGPVFGKVKNTTRKMKHSSQKNDLAQFKESDHNKQRNPPIHAKETKSSVKSYKTTGNEEKHFSDPAKTSLGFLQCHKKDDGLGTCLDSPLPLSQRLKLRFQNT