Details from NCBI annotation

Gene Symbol Smndc1
Gene Name survival motor neuron domain containing 1, transcript variant X1
Entrez Gene ID 101726695

Database interlinks

Part of NW_004624737.1 (Scaffold)

For more information consult the page for NW_004624737.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SMNDC1 ENSCPOG00000006335 (Guinea pig)

Gene Details

survival motor neuron domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005709, Guinea pig)

Protein Percentage 99.55%
CDS Percentage 95.67%
Ka/Ks Ratio 0.00977 (Ka = 0.002, Ks = 0.2049)

SMNDC1 ENSG00000119953 (Human)

Gene Details

survival motor neuron domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000358616, Human)

Protein Percentage 99.16%
CDS Percentage 94.96%
Ka/Ks Ratio 0.01678 (Ka = 0.0038, Ks = 0.2283)

Smndc1 ENSMUSG00000025024 (Mouse)

Gene Details

survival motor neuron domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000025997, Mouse)

Protein Percentage 98.74%
CDS Percentage 89.5%
Ka/Ks Ratio 0.00908 (Ka = 0.0058, Ks = 0.6365)

SMNDC1 ENSRNOG00000014833 (Rat)

Gene Details

survival motor neuron domain containing 1 (Smndc1), transcript variant 2, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000020539, Rat)

Protein Percentage 99.16%
CDS Percentage 90.62%
Ka/Ks Ratio 0.00747 (Ka = 0.0039, Ks = 0.5203)

Genome Location

Sequence Coding sequence

Length: 942 bp    Location: 35938953..35950994   Strand: +
>XM_004838954.1
ATGTCTCTCGCGATACTTCGCCTGCCTTGTCTTTTCCTCCTTCCGTCGCCCGGCTTTCCTTCCCTCCCCCTCACTGCCGACGGAGTTCTTCATTTTCGGACGGAATCGCCTCGTCGCGGAGATTTTTTTTTTTTCCTCTGCTGTTGCTCCTTCTGCTACCGCCGCCGCCAGTGGGCTCCTTTTCCTCGACCCCTTCCCGCCGCCCCATCCCTAGTCCCACACAAGATGTCAGAGGACCTAGCAAAGCAGCTGGCAAGCTACAAAGCTCAACTCCAGCAAGTAGAAGCTGCATTATCTGGAAATGGAGAAAACGAAGATTTGCTAAAATTGAAGAAAGATTTGCAAGAAGTTATAGAACTAACCAAAGATCTTCTGTCAACTCAGCCTTCAGAAACTCTTACAAGTTCAGACAGTTTTGCTTCTACTCAGCCCACTCATTCATGGAAAGTAGGAGACAAGTGTATGGCAGTCTGGAGTGAAGATGGACAGTGTTACGAAGCGGAGATTGAGGAGATAGACGAAGAAAACGGCACGGCTGCGATCACCTTTGCTGGTTATGGCAATGCTGAAGTGACTCCCCTGTTGAACCTCAAGCCTGTGGAAGAAGGAAGGAAGGCAAAGGAGGACAGTGGCAGCAAACCAATGTCAAAAAAAGAAATGATTGCCCAGCAGCGTGAATATAAAAAGAAGAAAGCTTTGAAAAAAGCACAAAGAATAAAGGAACTTGAGCAGGAAAGAGAAGACCAGAAAGTGAAATGGCAGCAGTTCAACAACAGAGCCTATTCTAAAAACAAAAAGGGCCAGGTGAAGAGGAGTATTTTTGCTTCACCTGAGAGTGTAACTGGCAAAGTTGGAGTAGGAACTTGTGGAATTGCTGATAAACCTATGACACAGTATCAAGATACTTCTAAATACAATGTCAGGCATTTGATGCCTCAATAA

Related Sequences

XP_004839011.1 Protein

Smndc1 PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Heterocephalus glaber]

Length: 313 aa      View alignments
>XP_004839011.1
MSLAILRLPCLFLLPSPGFPSLPLTADGVLHFRTESPRRGDFFFFLCCCSFCYRRRQWAPFPRPLPAAPSLVPHKMSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLTSSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGSKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ