Details from NCBI annotation

Gene Symbol Shoc2
Gene Name soc-2 suppressor of clear homolog (C. elegans), transcript variant X2
Entrez Gene ID 101725341

Database interlinks

Part of NW_004624737.1 (Scaffold)

For more information consult the page for NW_004624737.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SHOC2 ENSCPOG00000010884 (Guinea pig)

Gene Details

soc-2 suppressor of clear homolog (C. elegans)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009776, Guinea pig)

Protein Percentage 97.86%
CDS Percentage 96.55%
Ka/Ks Ratio 0.11117 (Ka = 0.0116, Ks = 0.1047)

SHOC2 ENSG00000108061 (Human)

Gene Details

soc-2 suppressor of clear homolog (C. elegans)

External Links

Gene Match (Ensembl Protein ID: ENSP00000358464, Human)

Protein Percentage 98.28%
CDS Percentage 94.33%
Ka/Ks Ratio 0.03689 (Ka = 0.008, Ks = 0.2172)

Shoc2 ENSMUSG00000024976 (Mouse)

Gene Details

soc-2 (suppressor of clear) homolog (C. elegans)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000025932, Mouse)

Protein Percentage 96.74%
CDS Percentage 90.55%
Ka/Ks Ratio 0.03836 (Ka = 0.0153, Ks = 0.3997)

Shoc2 ENSRNOG00000015339 (Rat)

Gene Details

soc-2 (suppressor of clear) homolog (C. elegans) (Shoc2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000020580, Rat)

Protein Percentage 96.56%
CDS Percentage 89.58%
Ka/Ks Ratio 0.03711 (Ka = 0.0165, Ks = 0.4439)

Genome Location

Sequence Coding sequence

Length: 1749 bp    Location: 35401036..35319759   Strand: -
>XM_004838951.1
ATGAGTACTAGTTTAGGAAAAGAAAAAGACTCTAAAGAGAAGGATCCCAAAGTACCATCAGCCAAGGAAAGAGAAAAGGAGGCAAAAGCCTCTGGAGGTTTTGGAAAAGAAAGCAAAGAAAAAGAACCTAAAACCAAAGGGAGAGATGCCAAAGATGGAAAGAAGGATTCCAGTGCTGCCCAACCAGGGGTTGCTTTTTCAGTTGACAACACAATCAAACGGCCAAATCCAGCACCTGGAAATAGGAAAAAATACAGTAATACAGAAGTAACTAAGGAGCTCAGCAAATGCCGGGAAGAAAATTCAATGCGTTTGGACTTATCCAAGAGATCTATACACATATTGCCATCATCAATCAAAGAGTTGACTCAATTAACAGAACTTTATTTATACAGTAACAAATTACAGTCCCTCCCAGCAGAGGTGGGCTGTTTAGTAAATCTCATGACACTGGCTCTAAGTGAAAATTCACTTACCAGTTTGCCTGACTCTCTTGATAACTTGAAGAAGCTTCGGATGCTTGATTTACGGCATAATAAACTGAGAGAAATTCCTTCAGTGGTATATGGGCTAGATTCTCTCACCACTCTCTACCTTCGCTTTAATCGTATAACTACTGTGGAAAAGGACATCAAAAACCTGTCAAAACTCAGCATGCTTAGCATTCGAGAGAACAAAATCAAACAGCTACCTGCTGAAATTGGTGATTTATGTAACCTCATTACGCTGGATGTAGCTCACAATCAACTTGAACACCTCCCAAAAGAGATTGGCAACTGCACACAGATTACCAACCTGGACCTGCAGCACAATGAACTGCTGGACCTCCCTGATACCATAGGAAACTTGTCCAGTTTAAGTCGTCTTGGACTGAGATATAATAGACTGTCAGCAATACCCAGATCATTAGCAAAATGCAGTGCACTTGAAGAATTAAATTTAGAGAACAATAACATTTCTACTTTACCAGAGAGTCTTTTATCCAGTCTTGTAAAACTGAATAGTTTGACCTTAGCTAGAAATTGCTTCCAGTTATATCCAGTCGGTGGTCCATCTCAGTTTTCTACCATCTATTCTCTCAACATGGAACACAATCGAATCAATAAAATCCCATTTGGAATTTTCTCCAGAGCAAAAGTATTAAGTAAGCTGAATATGAAGGACAATCAATTAACATCACTTCCTTTGGATTTTGGAACTTGGACCAGTATGGTGGAATTGAATTTAGCTACTAATCAGCTCACAAAGATCCCTGAGGATGTATCTGGTCTAGTTTCCCTTGAGGTTCTAATATTATCAAACAATCTTCTAAAGAAACTTCCCCATGGTCTTGGGAACCTTAGGAAATTAAGAGAGTTGGATCTGGAGGAGAACAAATTGGAATCCTTGCCGAATGAAATTGCTTATCTTAAGGATTTACAGAAATTAGTCTTGACAAATAACCAATTGACCACACTTCCCAGAGGCATTGGTCACCTCACCAATCTCACACACCTGGGCCTCGGAGAAAATCTGCTGACTCATCTTCCTGAGGAAATTGGTACACTGGAGAATCTAGAAGAACTGTATTTGAATGACAACCCCAACCTGCACAGCCTTCCCTTTGAGCTAGCTCTCTGCAGCAAACTTTCAATCATGAGTATTGAGAACTGTCCACTCAGTCACCTCCCCGCTCAGATTGTTGCTGGGGGACCTTCTTTTATTATTCAATTCTTAAAGATGCAGGGTCCGTATCGCGCCATGGTCTGA

Related Sequences

XP_004839008.1 Protein

Shoc2 PREDICTED: leucine-rich repeat protein SHOC-2 isoform X2 [Heterocephalus glaber]

Length: 582 aa      View alignments
>XP_004839008.1
MSTSLGKEKDSKEKDPKVPSAKEREKEAKASGGFGKESKEKEPKTKGRDAKDGKKDSSAAQPGVAFSVDNTIKRPNPAPGNRKKYSNTEVTKELSKCREENSMRLDLSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYGLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIRENKIKQLPAEIGDLCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPAQIVAGGPSFIIQFLKMQGPYRAMV