Details from NCBI annotation

Gene Symbol Trub1
Gene Name TruB pseudouridine (psi) synthase homolog 1 (E. coli)
Entrez Gene ID 101701564

Database interlinks

Part of NW_004624737.1 (Scaffold)

For more information consult the page for NW_004624737.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRUB1 ENSCPOG00000005617 (Guinea pig)

Gene Details

TruB pseudouridine (psi) synthase family member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005063, Guinea pig)

Protein Percentage 86.82%
CDS Percentage 87.58%
Ka/Ks Ratio 0.24424 (Ka = 0.0784, Ks = 0.3211)

TRUB1 ENSG00000165832 (Human)

Gene Details

TruB pseudouridine (psi) synthase family member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000298746, Human)

Protein Percentage 86.49%
CDS Percentage 87.55%
Ka/Ks Ratio 0.23355 (Ka = 0.0768, Ks = 0.3287)

Trub1 ENSMUSG00000025086 (Mouse)

Gene Details

TruB pseudouridine (psi) synthase homolog 1 (E. coli)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000026073, Mouse)

Protein Percentage 77.81%
CDS Percentage 79.78%
Ka/Ks Ratio 0.19534 (Ka = 0.1309, Ks = 0.6701)

Trub1 ENSRNOG00000017321 (Rat)

Gene Details

TruB pseudouridine (psi) synthase homolog 1 (E. coli) (Trub1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000023309, Rat)

Protein Percentage 78.89%
CDS Percentage 79.47%
Ka/Ks Ratio 0.20311 (Ka = 0.1356, Ks = 0.6674)

Genome Location

Sequence Coding sequence

Length: 1050 bp    Location: 31676648..31637564   Strand: -
>XM_004838868.1
ATGGCAGCTGCTGAGGCAACGTTACTGTCGCAGTCTTTGAAAACAGACAGAGCCCCAGGCTCTGAAACTGCAGAAACAGCCGCAACAGTGGCTAGGACATCTGTAGCAACGGCTGCGGCTGCGGCGATCGTGGCCGCTGCGAGAACCGGATCCGAAACCAGGGTCTCCAAGGCTGCTTTGGCTACTAAGCTGCTGTCACTCAGTGGCGTGTTCGCGGTGCACAAGCCCAAAGGGCCCACTTCAACCGAGCTGCTGAATCGGTTGAAGGAGAAGCTGCTGGCAGAAGCTGGAATGCCTTCTTCAGAATGGACCAAGAGGAAAAAACAGACTTTGAAAATTGGCCACGGAGGGACTCTAGACAGTGCAGCCGGAGGTGTTCTGGTCATTGGAATTGGAAGGGGAACAAAAATGTTGACCAGTATGTTGTCAGGGTCCAAGAGGTATATTGCCATTGGAGAACTGGGGAAAGCCACCGACACACAAGATTCTACAGGGAAAGTGACAGAAGAGAAACCCTATGATAAAATAACACAAGAAGATATTGAAGGCATTCTACAGAAATTTACTGGGACTATAATGCAAGTACCCCCACTCTATTCTGCATTAAAGAAAGATGGGCAGAGACTTTCAACTTTAATGAAGAGAGGCAAAGTAGTAGAGGCAAAACCTGCCAGGCCAGTTACGGTGTACAGTATCTCCCTTCAAAAATTCCAGCCGCCATTTTTCACATTAGATATTGAATGTGGAGGAGGTTTTTATATCAGAAGCCTGGTCAGTGACATTGGCAAAGAGCTTGCTTCCTGTGCCAGCGTACTAGAGCTGACCCGAACGAAACAGGGGCCATTCACACTGGAGGAGCACGCCCTTCCAGAAGACAAGTGGACCATTGGTGACATTGCACGGTCTCTTGGACACTGCTCATCGCTTTTCCCAGACCAGCTGGCACTTAAAAAATCAAAACCTGAGGAGTCCAATAGGCAGAATTTGAGCTGTGAATTTAAAACGCTAAATGAGACAAAGGGAGAAGGTGATGTGATTAAGACATTTTGA

Related Sequences

XP_004838925.1 Protein

Trub1 PREDICTED: probable tRNA pseudouridine synthase 1 [Heterocephalus glaber]

Length: 349 aa      View alignments
>XP_004838925.1
MAAAEATLLSQSLKTDRAPGSETAETAATVARTSVATAAAAAIVAAARTGSETRVSKAALATKLLSLSGVFAVHKPKGPTSTELLNRLKEKLLAEAGMPSSEWTKRKKQTLKIGHGGTLDSAAGGVLVIGIGRGTKMLTSMLSGSKRYIAIGELGKATDTQDSTGKVTEEKPYDKITQEDIEGILQKFTGTIMQVPPLYSALKKDGQRLSTLMKRGKVVEAKPARPVTVYSISLQKFQPPFFTLDIECGGGFYIRSLVSDIGKELASCASVLELTRTKQGPFTLEEHALPEDKWTIGDIARSLGHCSSLFPDQLALKKSKPEESNRQNLSCEFKTLNETKGEGDVIKTF