Sequence details NCBI ID: XM_004838861.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ccdc172
Gene Name coiled-coil domain containing 172
Entrez Gene ID 101699514

Database interlinks

Part of NW_004624737.1 (Scaffold)

For more information consult the page for NW_004624737.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CCDC172 ENSCPOG00000014936 (Guinea pig)

Gene Details

coiled-coil domain containing 172

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013460, Guinea pig)

Protein Percentage 80.63%
CDS Percentage 87.48%
Ka/Ks Ratio 0.36196 (Ka = 0.1081, Ks = 0.2988)

CCDC172 ENSG00000182645 (Human)

Gene Details

coiled-coil domain containing 172

External Links

Gene Match (Ensembl Protein ID: ENSP00000329860, Human)

Protein Percentage 83.4%
CDS Percentage 89.33%
Ka/Ks Ratio 0.36571 (Ka = 0.0897, Ks = 0.2454)

Ccdc172 ENSMUSG00000025090 (Mouse)

Gene Details

coiled-coil domain containing 172

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000068972, Mouse)

Protein Percentage 67.59%
CDS Percentage 76.42%
Ka/Ks Ratio 0.26928 (Ka = 0.2223, Ks = 0.8254)

Ccdc172 ENSRNOG00000017656 (Rat)

Gene Details

coiled-coil domain containing 172 (Ccdc172), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000029328, Rat)

Protein Percentage 68.77%
CDS Percentage 76.02%
Ka/Ks Ratio 0.22799 (Ka = 0.2184, Ks = 0.958)

Genome Location

Sequence Coding sequence

Length: 762 bp    Location: 30274521..30204570   Strand: -
Raw sequence   
>XM_004838861.1
ATGAGTTTAGAGTCCTTGTTTCAGCACATCATCTTCGCCGAGCATCAGGCTGAGGAGAGTCGACGGATGATGCGAGAAGTAAGGTCAGAAGTAACCAGATGTCGTGAAAAAATAAAGAAAGCAACAGAGGAGCTGAACGGAGAGAAAATCAAATTGGAATTTAAGGTTCAACAGTGTTCTGAAAAATCCTCTGTCTTACAGCTTCTACAAGCTCATGAAAATGCCTTAGAAAGACAATGCAGTGAAATTACAAACCAAAGGAATATGCTTCTCCAGACCTTTGAGACTACAAAGAAAAAAATGGTAGAAGAGGAAGAAAAATTTATTAAGGAAATTACTGACTTTAATAATGAGTATGAAATAACAAAGAAAAGAGAGCTTTTGCTGAAAGAAAATGTCAAGATTGAAATATTTGACTTAGAAAACCAAGCAAACATTTTGAAAAGAGAAATAAAGTCCATGGAACATGACAATGGGCAGTTCAGTGAACTTCAAAAACAAAAGAGTGAATTGATACAAGAATTACTTACTCTCCAAAGAAAACTTAAAGTTCTTAAGGATGAAGAGAAAGAAGCAATTTGTACTACCAAATATCTAGAGGCAGAAAAAATAAAGATCAATGAAAAGCCTCAAAATGACACTGAATGCTTAAGACTTAAGAAAGAATTAGAACTTTATAAGGAAGATGACATGGAAAGTGTTTATGAAACTCTCCAAACAGAAATAGAATTTTTGGAGATGGTAAGCTATCACTTCTTCTGA

Related Sequences

XP_004838918.1 Protein

Ccdc172 PREDICTED: coiled-coil domain-containing protein 172 [Heterocephalus glaber]

Length: 253 aa      View alignments
>XP_004838918.1
MSLESLFQHIIFAEHQAEESRRMMREVRSEVTRCREKIKKATEELNGEKIKLEFKVQQCSEKSSVLQLLQAHENALERQCSEITNQRNMLLQTFETTKKKMVEEEEKFIKEITDFNNEYEITKKRELLLKENVKIEIFDLENQANILKREIKSMEHDNGQFSELQKQKSELIQELLTLQRKLKVLKDEEKEAICTTKYLEAEKIKINEKPQNDTECLRLKKELELYKEDDMESVYETLQTEIEFLEMVSYHFF