Sequence details NCBI ID: XM_004838581.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Slit1
Gene Name slit homolog 1 (Drosophila), transcript variant X1
Entrez Gene ID 101722713

Database interlinks

Part of NW_004624737.1 (Scaffold)

For more information consult the page for NW_004624737.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SLIT1 ENSCPOG00000005743 (Guinea pig)

Gene Details

slit homolog 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005180, Guinea pig)

Protein Percentage 96.93%
CDS Percentage 93.61%
Ka/Ks Ratio 0.05374 (Ka = 0.0147, Ks = 0.2732)

SLIT1 ENSG00000187122 (Human)

Gene Details

slit homolog 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSP00000266058, Human)

Protein Percentage 94.85%
CDS Percentage 89.83%
Ka/Ks Ratio 0.04379 (Ka = 0.0241, Ks = 0.5508)

Slit1 ENSMUSG00000025020 (Mouse)

Gene Details

slit homolog 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000025993, Mouse)

Protein Percentage 94.51%
CDS Percentage 88.18%
Ka/Ks Ratio 0.04209 (Ka = 0.0278, Ks = 0.6617)

Slit1 ENSRNOG00000026065 (Rat)

Gene Details

slit homolog 1 (Drosophila) (Slit1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000035315, Rat)

Protein Percentage 94.64%
CDS Percentage 87.95%
Ka/Ks Ratio 0.03967 (Ka = 0.0269, Ks = 0.6783)

Genome Location

Sequence Coding sequence

Length: 4605 bp    Location: 8632302..8457554   Strand: -
Raw sequence   
>XM_004838581.1
ATGGCGCTGACGCCCGGGCGTGGGTCCTCGGCAGGGCTGGTTCGGCCGGAGCTCTGGCTGCTGCTGTGGGCAGCCGCGTGGCGCCTGGGAGCCATGGCGTGCCCCGCCCTCTGCACCTGCACGGGCACCACGGTGGACTGCCACGGCACGGGGCTGCAGGCAGTCCCTAAGAACATCCCGAGGAGCACTGAGCGCCTGGAACTCAATGGCAACAACATCACTCGGATCCATAAGAATGACTTTGCTGGGCTGAAGCAGATTCGGGTGCTGCAGCTGATGGAGAACCAGATCAGAGCTGTGGAGCGAGGGGCTTTTGATGACATGAAGGAGCTGGAGCGACTACGACTAAATCGGAACCAGCTGCACATGTTGCCAGAACTGCTGTTCCAGAACAACCAGGCTCTGTCCAGACTGGACCTGAGCGAGAACGCCCTGCAGGCTATTCCCAGGAAGGCTTTTCGAGGAGCCACAGACCTCAAAAACCTACAGCTGGACAAGAACCAGATTAGCTGCATCGAGGAAGGGGCTTTCCGAGCCCTGCGTGGGCTAGAGGTGCTGACCCTGAACAACAACAACATCACCATGATTCCTGTGTCCAGCTTCAATCACATGCCCAAGCTTCGGACCTTCCGCCTGCACTCCAACCACCTGTTCTGCGACTGCCACCTGGCCTGGCTGTCTCAGTGGCTGAGGCAGCGGCCGACAATCGGGCTCTTCACCCAGTGCTCAGGCCCCGCCAGCCTGCGTGGCCTCAATGTGGCTGAGGTCCAGAAGAGTGAGTTCAGCTGCTCAGGCCAGGGCGAGGCAGGGCACGTGCCTGCCTGCACCCTTTCCTTGGGTTCCTGCCCGGCCATGTGCGCCTGCAGCAATGGCATTGTGGATTGCCGCGGCAAAGGCCTTACCGCCATCCCTGCCAACCTGCCTGAGACCATGACAGAGATCCGCTTGGAGCTCAATGGAATCAAGTCCATCCCTCCAGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATAGACCTGAGCAACAATCAGATCGCCGAGATCGCGCCTGATGCCTTCCAGGGCCTCCGCTCCTTGAATTCACTGGTCCTCTATGGGAACAAGATCACAGACCTCCCTCGCGGTGTGTTTGGAGGCCTGTACACTCTACAGCTTCTGCTCCTGAATGCCAACAAGATCAACTGCATCAGGCCTGATGCCTTCCAGGACTTACAGAACCTCTCACTACTCTCCCTGTATGACAACAAGATCCAGAGTCTTGCCAAGGGCACCTTCACATCCCTGAGGGCCATCCAAACACTGCATCTGGCCCAGAACCCTTTCATCTGTGATTGTAACCTCAAGTGGCTGGCGGACTTCCTGCGCACTAATCCCATAGAGACAAGTGGGGCCCGCTGTGCCAGCCCCCGGCGCCTCACCAACAAGCGCATTGGGCAGATCAAGAGCAAGAAGTTCCGGTGCTCAGCCAAAGAGCAGTACTTCATTCCAGGCACAGAGGATTACCAGCTGAACAGCGAGTGCAGCATCGATGTTGCCTGTCCTCACAAGTGCCGCTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAGGCTCTCCAAGATCCCTGAGCGCATCCCACAGTCCACAGCAGAGCTACGATTGAACAACAATGAAATCTCCCTCCTGGAGGCCACTGGGATGTTTAAAAAACTTACACATCTGAAGAAAATCAACCTGAGCAACAACAAGGTGTCAGAAATCGAAGATGGCACGTTTGAGGGAGCGGCCTCTGTGAGTGAGCTGCACCTGACTGCAAACCAGCTGGAGTCCATCCGGAGTGGCATGTTCCGGGGTCTGGACGGCTTGCGGACCCTGATGCTTAGAAACAACCGAATCAGCTGCATCCACAATGACAGCTTCACGGGCCTGCGAAATGTCCGACTCCTCTCACTGTACGACAATCACATCACCACCATCTCCCCTGGAGCCTTTGACACCCTGCAGGCTCTCTCCACGCTAAACCTCCTGGCCAACCCATTCAACTGTAACTGCCAGCTGGCCTGGCTGGGCGATTGGCTGAGGAAGAGGAAGATTGTGACTGGAAACCCTCGTTGCCAGAACCCAGACTTCTTGCGGCAGATCCCTCTGCAGGATGTGGCCTTTCCTGACTTCAGGTGTGAGGAAGGCCAGGAGGAAGGGGGCTGCCTGCCCCGCCCACAGTGCCCCCAGGAGTGTGCCTGCCTGGACACCGTGGTCAGATGCAGCAACAAGCACCTGCGGGCTCTGCCCAAGGGCATCCCCAAAAATGTCACAGAGCTCTACTTGGATGGCAACCAGTTCACACTGGTGCCGGGTCAACTCTCCACCTTCAAGTACTTGCAACTTGTGGACCTCAGTAACAACAAGATCAGTTCCTTAAGCAATTCCTCCTTCACCAATATGAGCCAGCTGACCACTCTTATCCTCAGCTACAACGCCCTCCAGTGCATCCCTCCTCTGGCCTTCCAGGGGCTCCGCTCCCTGCGCCTGCTGTCCCTCCATGGCAATGATGTCTCCACCCTCCAAGAGGGCATCTTCGCAGATGTGACCTCACTGTCTCACCTGGCTATTGGTGCCAATCCTCTGTACTGTGACTGTCACCTCCGCTGGCTATCCAATTGGGTGAAAACTGGCTACAAGGAGCCAGGCATTGCCCGCTGCACTGGGCCTCCTGACATGGAGGGCAAGCTGCTGCTCACCACACCTGCCAAGAAGTTTGAATGCCAAGGTCCCCCCACTCTGGCTGTCCAGACCAAGTGTGACCCCTGCTTGTCCAGCCCATGCCAAAATCAGGGTACCTGCCACAACGACCCCCTTGAGGTGTATAGGTGTGCCTGCCCCAGTGGCTATAAGGGCCGACACTGTGAGGTATCCCTGGACAGCTGTTCCAGCAGCTCCTGTGGAAATGGGGGGACCTGCCAAGCTAAGGAGGGCGAGGATGCCAGCTTCACGTGCTCCTGTCCCATCGGCTTTGAAGGACCAACCTGTGGGGTGAACACGGATGACTGTGTGGAGCATGCTTGTGCCAATGGGGGCACCTGCGTGGATGGTGTGGGCAACTACACCTGCCAGTGCCCCCTACAGTATGTGGGAAGGGCCTGTGAGCAGCTGGTGGACTTTTGCTCCCTGGATCTGAACCCGTGCCAGCATAAGGCCCAGTGTGTGGGTACTCCAGACGGGCCCAGGTGTGAATGCGCACCAGGTTACACAGGTGACAACTGCAGTGTGAACCAAGATGATTGCAGTGGTCATCGCTGCCAGAACGGAGCCCAGTGTGTGGACGCAGTCAACAGCTACACTTGCCTCTGTGCCAAGGGCTACAGTGGACAGCTCTGTGAGATCCCTCCCCGCTCACCTGCCCCCAGGAACCCCTGTGAGGGGACTGAGTGCCAGAATGGGGCCAACTGTGTGGACCAGGGCAGCCAGCCTGTGTGCCAGTGCCTCCCAGGCTTCGGTGGTCCTGAGTGTGAGAAGTTGCTCAGCGTCAACTTTGTGGATCGAGACACTTACCTGCAGTTCACTGACCTGCAGAATTGGCCACGGGCCAACATCACACTACAGGTCTCCACGGCAGAGGACAATGGGATTCTGCTGTACAATGGGGACAATGACCATATCGCAGTTGAGCTGTACCAGGGCCATGTGCGTGTCAGCTATGACCCAGGCAGCTTCCCCAGTTCTGCCATCTACAGTGCTGAGATGATCAATGATGGACAGTTCCACACTGTTGAACTGGTCACCTTTGACCAGATGGTGAACCTCTCTATTGATGGCGGCAGTCCCATGACCATGGACAACTTCGGCAAACACTACACACTCAACAGTGAGGCGCCCCTCTATGTGGGAGGGATGCCAGTGGATGTTAACTCAGCTGCCTTCCGGCTGTGGCAGATCCTTAATGGTACCAGCTTCCACGGTTGCATCCGAAACCTGTATATAAACAATGAACTACAAGACTTCACCAAGACGCAGATGAAACCGGGCGTGGTGCCGGGGTGTGAACCCTGCCGCAAACTCTATTGCCTGCATGGCATCTGTCAGCCCAATGCCACCCCAGGGCCCATGTGCCACTGTGAGGCTGGCTGGGGGGGCCTGCACTGCGACCAGCCAGCTGATGGCCCCTGCCATGGCCACAAGTGTGTCCATGGGAAATGTGTGCCCCTCGATGCCCTGTCCTACAGCTGCCAGTGCCAGGAGGGTTACTCAGGGGCCTTATGCAACCAGGCTGGGGCAGTGGTAGAGCCCTGTGGGGACCTGCAATGCCTGCATGGCCACTGCCAGGCTTCGGCCACCAAGGGGGCACACTGCGTATGTGACCCCGGCTTTTCAGGCGAGCTATGTGAGCAAGAGTCCGAGTGCCGGGGGGACCCTGTCCGGGATTTTCACCGGGTCCAGAGGGGCTATGCCATCTGCCAAACCACGCGCCCGCTATCGTGGGTGGAGTGTCGGGGCACGTGCCCAGGCCAGGGCTGCTGCCTAGGCCTGCGGCTGAAGCGGAGGAAGCTTACCTTCGAGTGCAGCGACGGGACCTCTTTTGCCGAGGAGGTGGAGAAGCCCACCAAATGTGGTTGTGCCCTCTGTGTGTAG

Related Sequences

XP_004838638.1 Protein

Slit1 PREDICTED: slit homolog 1 protein isoform X1 [Heterocephalus glaber]

Length: 1534 aa      View alignments
>XP_004838638.1
MALTPGRGSSAGLVRPELWLLLWAAAWRLGAMACPALCTCTGTTVDCHGTGLQAVPKNIPRSTERLELNGNNITRIHKNDFAGLKQIRVLQLMENQIRAVERGAFDDMKELERLRLNRNQLHMLPELLFQNNQALSRLDLSENALQAIPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITMIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLRGLNVAEVQKSEFSCSGQGEAGHVPACTLSLGSCPAMCACSNGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETSGARCASPRRLTNKRIGQIKSKKFRCSAKEQYFIPGTEDYQLNSECSIDVACPHKCRCEASVVECSSLRLSKIPERIPQSTAELRLNNNEISLLEATGMFKKLTHLKKINLSNNKVSEIEDGTFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNHITTISPGAFDTLQALSTLNLLANPFNCNCQLAWLGDWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCEEGQEEGGCLPRPQCPQECACLDTVVRCSNKHLRALPKGIPKNVTELYLDGNQFTLVPGQLSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDVSTLQEGIFADVTSLSHLAIGANPLYCDCHLRWLSNWVKTGYKEPGIARCTGPPDMEGKLLLTTPAKKFECQGPPTLAVQTKCDPCLSSPCQNQGTCHNDPLEVYRCACPSGYKGRHCEVSLDSCSSSSCGNGGTCQAKEGEDASFTCSCPIGFEGPTCGVNTDDCVEHACANGGTCVDGVGNYTCQCPLQYVGRACEQLVDFCSLDLNPCQHKAQCVGTPDGPRCECAPGYTGDNCSVNQDDCSGHRCQNGAQCVDAVNSYTCLCAKGYSGQLCEIPPRSPAPRNPCEGTECQNGANCVDQGSQPVCQCLPGFGGPECEKLLSVNFVDRDTYLQFTDLQNWPRANITLQVSTAEDNGILLYNGDNDHIAVELYQGHVRVSYDPGSFPSSAIYSAEMINDGQFHTVELVTFDQMVNLSIDGGSPMTMDNFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQILNGTSFHGCIRNLYINNELQDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPMCHCEAGWGGLHCDQPADGPCHGHKCVHGKCVPLDALSYSCQCQEGYSGALCNQAGAVVEPCGDLQCLHGHCQASATKGAHCVCDPGFSGELCEQESECRGDPVRDFHRVQRGYAICQTTRPLSWVECRGTCPGQGCCLGLRLKRRKLTFECSDGTSFAEEVEKPTKCGCALCV