Details from NCBI annotation

Gene Symbol Pdlim1
Gene Name PDZ and LIM domain 1
Entrez Gene ID 101712207

Database interlinks

Part of NW_004624737.1 (Scaffold)

For more information consult the page for NW_004624737.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDLIM1 ENSCPOG00000002869 (Guinea pig)

Gene Details

PDZ and LIM domain 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002608, Guinea pig)

Protein Percentage 95.12%
CDS Percentage 94.41%
Ka/Ks Ratio 0.14223 (Ka = 0.0233, Ks = 0.1636)

PDLIM1 ENSG00000107438 (Human)

Gene Details

PDZ and LIM domain 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000360305, Human)

Protein Percentage 91.19%
CDS Percentage 90.27%
Ka/Ks Ratio 0.14319 (Ka = 0.0442, Ks = 0.3084)

Pdlim1 ENSMUSG00000055044 (Mouse)

Gene Details

PDZ and LIM domain 1 (elfin)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000064545, Mouse)

Protein Percentage 90.52%
CDS Percentage 88.18%
Ka/Ks Ratio 0.11199 (Ka = 0.0483, Ks = 0.4315)

Pdlim1 ENSRNOG00000016166 (Rat)

Gene Details

PDZ and LIM domain 1 (Pdlim1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022000, Rat)

Protein Percentage 90.83%
CDS Percentage 87.46%
Ka/Ks Ratio 0.09836 (Ka = 0.0474, Ks = 0.4824)

Genome Location

Sequence Coding sequence

Length: 990 bp    Location: 6530470..6485607   Strand: -
>XM_004838554.1
ATGGCTACCCAGCAGATCGTCCTTCAGGGCCCGGGACCGTGGGGCTTCCGCCTCGTGGGCGGCAAAGACTTCGAGCAGCCTCTCGCCATTTCCCGGGTCACTCCTGGAAGCAAAGCTGCCATAGCTAATTTATGTATTGGAGATATAATCACAGCCATTGATGGGGAAAATACCAGCAATATGACGCACTTGGAAGCTCAGAACAAAATCAAAGGCTGTACAGATAACATGACTCTCACAGTAACCAGATCTGAACATAAAATCTGGTCTCCTCTAGTGACTGAGGAGGGGAAACGTCATCCATACAAGATGAATTTAGCCTCTGAACCTCAGGAGGTCCTGCACATAGGAAGTGCCCACAACCGAAGTGCCATGCCCTTTACTGCCTCGCCTGCCTCCAACACTGCCCACAGAGTCATCAAGAACCAGTACAACAACCCAGCAGGCCTCTACTCTTCTGAAAACATATCTAGCTTCAATAGTGCTGTGGAGTCAAAGACTACAGCCAGTGGGGAGGAGGCAAATGGCAGACCCTTAGATCATTCGCAGCATTCAGGCAGCCTCATCATTGACAAAGAATCTGAAGTTTACAAGATGCTTCAGGAGAAACAGGAGTTAAATGAGCCCCCCAAACAGTCCACATCATTCCTGGTTTTGCAGGAAATCCTGGAGTCAGAGGAGAAAGGGGATCCCAGCAAGCCCTCAGGATTCAGAAGTGTTAAAGCTCCAGTTACCAAAGTGGCTGCATCTGTTGGAAATGCTCAGAAGTTGCCCATATGTGACAAATGTGGCACTGGCATTGTTGGTGTGTTTGTGAAGTTACGGAACCATCACCGCCACCCTGAATGTTATGTGTGCACTGACTGTGGTACCAATCTGAAACAGAAGGGCCATTTCTTTGTAGAGGATCAGATCTACTGTGAAAAGCATGCTCGGGAACGGGTCACACCACCTGAGGGCTATGATGTGGTCACAGTGTTCCCGAAGTGA

Related Sequences

XP_004838611.1 Protein

Pdlim1 PREDICTED: PDZ and LIM domain protein 1-like [Heterocephalus glaber]

Length: 329 aa      View alignments
>XP_004838611.1
MATQQIVLQGPGPWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDIITAIDGENTSNMTHLEAQNKIKGCTDNMTLTVTRSEHKIWSPLVTEEGKRHPYKMNLASEPQEVLHIGSAHNRSAMPFTASPASNTAHRVIKNQYNNPAGLYSSENISSFNSAVESKTTASGEEANGRPLDHSQHSGSLIIDKESEVYKMLQEKQELNEPPKQSTSFLVLQEILESEEKGDPSKPSGFRSVKAPVTKVAASVGNAQKLPICDKCGTGIVGVFVKLRNHHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVTPPEGYDVVTVFPK