Details from NCBI annotation

Gene Symbol Smc5
Gene Name structural maintenance of chromosomes 5
Entrez Gene ID 101715146

Database interlinks

Part of NW_004624736.1 (Scaffold)

For more information consult the page for NW_004624736.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SMC5 ENSCPOG00000000198 (Guinea pig)

Gene Details

structural maintenance of chromosomes 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000175, Guinea pig)

Protein Percentage 95.08%
CDS Percentage 94.32%
Ka/Ks Ratio 0.13089 (Ka = 0.0241, Ks = 0.1845)

SMC5 ENSG00000198887 (Human)

Gene Details

structural maintenance of chromosomes 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000354957, Human)

Protein Percentage 90.71%
CDS Percentage 90.71%
Ka/Ks Ratio 0.14197 (Ka = 0.0452, Ks = 0.3182)

Smc5 ENSMUSG00000024943 (Mouse)

Gene Details

structural maintenance of chromosomes 5

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000084837, Mouse)

Protein Percentage 88.73%
CDS Percentage 85.93%
Ka/Ks Ratio 0.09854 (Ka = 0.0601, Ks = 0.61)

Smc5 ENSRNOG00000030572 (Rat)

Gene Details

structural maintenance of chromosomes 5 (Smc5), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000061357, Rat)

Protein Percentage 89.82%
CDS Percentage 86.4%
Ka/Ks Ratio 0.09213 (Ka = 0.0539, Ks = 0.585)

Genome Location

Sequence Coding sequence

Length: 3300 bp    Location: 2803482..2700161   Strand: -
>XM_004838450.1
ATGGCGACCCCGGGCAGTAAGACGCCGACCCTGGCTTCCAAGAGGGCACTCCCGGCAGATCCTCCCTCCGGAGTCCTGAGCAAGAGAAAGAATTCAGGCCCTCTGCAGTCGCGGCTGCCGTCGTCTGGGCCTTTCGTGGAGGGCTCCATCGTCCGCATCGCGATGGAGAACTTCCTAACCTATGATATCTGTGAAGTATCTCCCGGACCCCACTTGAACATGATTATTGGAGCTAATGGAACAGGGAAGTCAAGTATCGTGTGTGCCATTTGCCTTGGATTAGCAGGCAAACCTGCTTTTATGGGACGGGCAGATAAGGTTGGATTTTTTGTGAAGAGAGGATGTTCCAAAGGCAAGGTTGAAATTGAATTGTTCAGGACTTCTGGAAACCTGCTTATCACCCGTGAGATTGATGTGGCAAAAAATCAGTCCTTTTGGTTCATCAACAACAAGTCTACAACCCAGAAAGTAGTAGAAGAGCAAGTTGCAGCCTTAAATATTCAAGTGGGCAATCTTTGCCAGTTTCTACCTCAGGACAAAGTTGGAGAATTTGCAAAACTCAGCAAGATTGAACTCCTTGAAGCTACTGAGAAGTCAATTGGTCCTCCAGAAATGCACAGATATCACTGTGAACTCAAAAACTTCAGGGAGAAAGAAAAACAACTAGAGACCTCATGCAAAGAGAAAACTGAATATCTAGAGAAAATGGTTCAGAGAAATGAAAGATATAAACAAGATGTTGAGCGGTTCTATGAACGTAAGCGACATTTAGATTTAATTGAGATGCTTGAAGCCAAAAGACCGTGGGTGGAATATGAAAATGTTCGTCAAGAATATGAAGAAGTAAAACTAGCTCGTGACCGAGTGAAGGATGAGGTAAAAAAACTTAAAGAAGGACAGATCCCTATTACACTTCGAATTAAGGAGATTGAAAGGCAGCGCTGTGATTTGGAGGCTCAAATCAAAGAAAAGGCAACGGATATTAAGGAGACATCTCAAAGATGCAAACAAAAGCAAGACATTATAGAAAGGAAAGATAAACATATTGAGGAACTTCAGCAAGCTTTAACAGTAAAACAAAATGAAGAGCAAGACCGACAGAAGAGAATAAGCAATACTCGCAAAATGATAGAGGATTTACAGAATGAACTAAGGACTACCGAAAACTGTGAGACTCTTCAGCCTCAGATTGATGGCATTACCAATGACCTGAGACGAGTTCAAGATGAAAAGGCATTATGTGAAGGCGAGATAATTGATAAACGAAGGGAGAGGGAGACTCTGGAGAAAGAGAAAAAGAGTGTTGGTGAGCATATTGTACGTTTTGACAATCTTATGAATCAAAAAGAAGATAAGCTGAGACAGAGATACCGGGACACATATGAAGCTGTTTTATGGCTGAGAAGTAACAGAGACAGATTTAAGAAAAGAGTTTGCGAGCCCATAATGCTTATGATCAACATGAAAGATAATAAAAATGCCAAATATATTGAAAATCATATTTCGTCAAATGACTTGAGAGCTTTTGTGTTTGAAAATCAAGAAGATATGGAGATTTTCCTCAGAGAGGTTCGTGACAATAAAAAGCTAAGAGTCAATACTGTTATTGCTCCCAAGATTTCATATGCAGACAGACCACCTTCAAGATCTCTGAGTGAACTAAAACAATATGGATTTTTTTCTTATTTGCGAGAGTTATTTGATGCACCTGAGCCTGTAATGAGTTACCTTTGCTTCCAGTATCACATTCATGAAGTTCCTGTGGGAACTGAAAAAACCAGAGAAAGAATTGAGTGGGTAATACAAGAAACCCAATTAAAACAAGTTTATACAGCAGATGAAAAATATGTGGTGAAAACTTCTGTTTATTCAAACAAAGTTATTTCCAGTAACACATCCCTCAAAGTAGCCCAGTTTCTCACAGTCACTGTGGATCTAGAACAAAGAAGACAGTTGGAAGAACAGCTAAAGGAAATTAATAGAAAATTGGAAGCAGTGGATTCAGGATTGCTTGCCTTACGTGACACAAACAGACATCTAGAACGCATAGACAATGAACTTAGACAAAAGAAGAAGGACCTTCTTGAAAGAAAAACCAAGAAAAGACAACTGGAACAAAAAATTAGTTCCAAACTAGGAAGTTTAAAGCTGATGGAACAAGACACTTGCAACCTTGAAGAAGAAGAGCGAAAAGCAAATACCAAAATCAAAGAAATAAATGTTCAGAAAGCAAAACTTGTTACTGAATTAACAAGCCTAGTAAAGATTTGTACTTCTTTGCATATACAAAAAGTAGATTTAATTCTTCAAAATACCACGGTGATCTCTGAGAAGAACAAATTAGAATCTGATTATGTAGCTGCATCTTCACGGCTGCGTCTAACAGAGCAACATTTTATTGAGTTGGATGACAATAGGCAACGATTATTGCAGAAGTGCAAGGAACTTATGAAGAGAGCTAGGCAAGTATGTAACCTGAGTGCACAGCAGACTGTTCCTCAAGAATATCAGACACAAGTACCCACCATTCCAAATGGACACAACTCCTCACCCCCCATGGCTTTTCAAGATCTTCCAAACACATTGGATGAAATTGATGCTTTATTAACTGAAGAAAGATCAAGAGCTTCCTGCTTCACAGGACTGAATCCTACAGTGGTTCAGGAATACACAAAAAGAGAAGAAGAAATAGTACAATTAACTGAGGAACTAAAGGGAAAGAAAGTTGAACTAGACCAATATAGAGAAAATATTTCACAGGTAAAAGAACGATGGCTAAATCCCTTAAAAGAGCTAGTAGAAAAAATTAATGAAAAATTCAGCAATTTTTTTAGTTCCATGCAGTGTGCTGGTGAAGTTGATCTCCATACAGAAAACGAGGAAGACTATGATAAATACGGAATTCGAATTAGAGTCAAATTTCGCAGTAGTACTCAACTGCATGAATTGACTCCTCATCATCAAAGTGGGGGTGAAAGAAGTGTTTCCACCATGCTGTACTTGATGGCACTTCAAGAGCTTAATAGATGTCCATTTAGAGTAGTTGATGAAATTAATCAGGGAATGGACCCAATTAATGAACGGAGAGTATTTGAAATGGTTGTAAACACTGCCTGTAAAGAAAACACATCTCAATACTTCTTTATTACACCCAAGCTCCTGCAAAATCTTCCTTATTCTGAAAAGATGACGGTATTGTTTATCTACAATGGCCCTCATATGCTGGAATCAAACAGATGGCATTTAAAGGCTTTCCAAAGGCGGCGCCGCCGTATTACATTCACTCAGCCTGCTCAGTAA

Related Sequences

XP_004838507.1 Protein

Smc5 PREDICTED: structural maintenance of chromosomes protein 5 [Heterocephalus glaber]

Length: 1099 aa      View alignments
>XP_004838507.1
MATPGSKTPTLASKRALPADPPSGVLSKRKNSGPLQSRLPSSGPFVEGSIVRIAMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFVKRGCSKGKVEIELFRTSGNLLITREIDVAKNQSFWFINNKSTTQKVVEEQVAALNIQVGNLCQFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHRYHCELKNFREKEKQLETSCKEKTEYLEKMVQRNERYKQDVERFYERKRHLDLIEMLEAKRPWVEYENVRQEYEEVKLARDRVKDEVKKLKEGQIPITLRIKEIERQRCDLEAQIKEKATDIKETSQRCKQKQDIIERKDKHIEELQQALTVKQNEEQDRQKRISNTRKMIEDLQNELRTTENCETLQPQIDGITNDLRRVQDEKALCEGEIIDKRRERETLEKEKKSVGEHIVRFDNLMNQKEDKLRQRYRDTYEAVLWLRSNRDRFKKRVCEPIMLMINMKDNKNAKYIENHISSNDLRAFVFENQEDMEIFLREVRDNKKLRVNTVIAPKISYADRPPSRSLSELKQYGFFSYLRELFDAPEPVMSYLCFQYHIHEVPVGTEKTRERIEWVIQETQLKQVYTADEKYVVKTSVYSNKVISSNTSLKVAQFLTVTVDLEQRRQLEEQLKEINRKLEAVDSGLLALRDTNRHLERIDNELRQKKKDLLERKTKKRQLEQKISSKLGSLKLMEQDTCNLEEEERKANTKIKEINVQKAKLVTELTSLVKICTSLHIQKVDLILQNTTVISEKNKLESDYVAASSRLRLTEQHFIELDDNRQRLLQKCKELMKRARQVCNLSAQQTVPQEYQTQVPTIPNGHNSSPPMAFQDLPNTLDEIDALLTEERSRASCFTGLNPTVVQEYTKREEEIVQLTEELKGKKVELDQYRENISQVKERWLNPLKELVEKINEKFSNFFSSMQCAGEVDLHTENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDEINQGMDPINERRVFEMVVNTACKENTSQYFFITPKLLQNLPYSEKMTVLFIYNGPHMLESNRWHLKAFQRRRRRITFTQPAQ