Sequence details NCBI ID: XM_004838438.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sigmar1
Gene Name sigma non-opioid intracellular receptor 1, transcript variant X1
Entrez Gene ID 101707150

Database interlinks

Part of NW_004624736.1 (Scaffold)

For more information consult the page for NW_004624736.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

Sigmar1 ENSCPOG00000024938 (Guinea pig)

Gene Details

Cavia porcellus sigma non-opioid intracellular receptor 1 (Sigmar1), mRNA.

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019032, Guinea pig)

Protein Percentage 95.07%
CDS Percentage 94.02%
Ka/Ks Ratio 0.1391 (Ka = 0.0273, Ks = 0.1962)

SIGMAR1 ENSG00000147955 (Human)

Gene Details

sigma non-opioid intracellular receptor 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000277010, Human)

Protein Percentage 95.96%
CDS Percentage 91.03%
Ka/Ks Ratio 0.03495 (Ka = 0.0185, Ks = 0.5295)

Sigmar1 ENSMUSG00000036078 (Mouse)

Gene Details

sigma non-opioid intracellular receptor 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000056027, Mouse)

Protein Percentage 89.24%
CDS Percentage 85.95%
Ka/Ks Ratio 0.09477 (Ka = 0.0616, Ks = 0.65)

Sigmar1 ENSRNOG00000014604 (Rat)

Gene Details

sigma non-opioid intracellular receptor 1 (Sigmar1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000019795, Rat)

Protein Percentage 92.38%
CDS Percentage 87.89%
Ka/Ks Ratio 0.06909 (Ka = 0.0408, Ks = 0.5903)

Genome Location

Sequence Coding sequence

Length: 672 bp    Location: 39035176..39033257   Strand: -
Raw sequence   
>XM_004838438.1
ATGCAGTGGGCCATGGGCCGGCGTTGGGCGTGGGTCGCGCTGCTTCTGGCTGCAGTGGCAGTGCTAACCCAGGTCGTCTGGCTCTGGCTGGGTGCGCAGAGCTTCGTCTTCCAGCGCGAAGAGATCGCGCAGCTAGCGCGGCAGTACGCCGGTCTGGACCACGAGCAGGCCTTCTCTAAGCTGATCGTGGAGCTGCGGAGGCTGCACCCGGGCCACGTGCTGCCTGATGAGGAGCTGCAGTGGGTATTCGTGAACGCGGGCGGCTGGATGGGCGCCATGTGCCTTCTGCACGCCTCGCTGTCCGAGTACGTGCTGCTCTTCGGCACCGCCCTGGGCTCCCGCGGCCACTCGGGCCGCTATTGGGCTGAGATCTCCGACACCATTATCTCCGGCACTTTCCACCAGTGGAGAGAGGGCACCACCAAAAGTGAGGTCTTCTACCCAGGGGAGACAGTGGTGCATGGGCCTGGTGAAGCAACGGCTGTGGAATGGGGACCAAACACATGGATGGTGGAGTATGGCCGGGGTGTCATCCCATCTACCCTGCCATTTGCACTGGCTGACACTGTCTTCAGCACCCAGGACTTCCTCACCCTCTTCTATACCCTCCGAGCCTATGCCCGAGGCCTCCGGCTTGAACTCACCACCTACCTCTTCGGCCAGGACCCTTGA

Related Sequences

XP_004838495.1 Protein

Sigmar1 PREDICTED: sigma non-opioid intracellular receptor 1 isoform X1 [Heterocephalus glaber]

Length: 223 aa      View alignments
>XP_004838495.1
MQWAMGRRWAWVALLLAAVAVLTQVVWLWLGAQSFVFQREEIAQLARQYAGLDHEQAFSKLIVELRRLHPGHVLPDEELQWVFVNAGGWMGAMCLLHASLSEYVLLFGTALGSRGHSGRYWAEISDTIISGTFHQWREGTTKSEVFYPGETVVHGPGEATAVEWGPNTWMVEYGRGVIPSTLPFALADTVFSTQDFLTLFYTLRAYARGLRLELTTYLFGQDP