Sequence details NCBI ID: XM_004838398.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Chmp5
Gene Name charged multivesicular body protein 5
Entrez Gene ID 101723765

Database interlinks

Part of NW_004624736.1 (Scaffold)

For more information consult the page for NW_004624736.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CHMP5 ENSCPOG00000003467 (Guinea pig)

Gene Details

charged multivesicular body protein 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003132, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 97.26%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.1089)

CHMP5 ENSG00000086065 (Human)

Gene Details

charged multivesicular body protein 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000223500, Human)

Protein Percentage 98.63%
CDS Percentage 93.91%
Ka/Ks Ratio 0.02515 (Ka = 0.0064, Ks = 0.2545)

Chmp5 ENSMUSG00000028419 (Mouse)

Gene Details

charged multivesicular body protein 5

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000030128, Mouse)

Protein Percentage 99.09%
CDS Percentage 88.58%
Ka/Ks Ratio 0.00583 (Ka = 0.0045, Ks = 0.7634)

Genome Location

Sequence Coding sequence

Length: 660 bp    Location: 38025280..38044255   Strand: +
Raw sequence   
>XM_004838398.1
ATGAACCGATTCTTCGGGAAAGCGAAACCCAAGGCTCCGCCGCCCAGCCTGACTGACTGCATTGGCACGGTGGACAGCAGGGCAGAATCTATTGATAAGAAGATTTCCCGACTGGATGCTGAGCTAGTGAAGTACAAGGATCAAATCAAGAAGATGAGAGAGGGCCCTGCAAAGAATATGGTCAAGCAGAAAGCCTTGCGAGTTTTAAAGCAAAAGCGGATGTATGAGCAGCAGCGGGACAACCTTGCCCAACAGTCCTTTAACATGGAACAAGCCAATTACACCATCCAGTCATTGAAGGACACCAAGACTACGGTGGATGCTATGAAACAGGGAGTAAAAGAAATGAAGAAGGCATACAAGGAAGTGAAAATTGACCAGATTGAGGATTTACAAGACCAACTAGAGGATATGATGGAAGATGCAAATGAAATTCAAGAAGCACTGAGTCGCAGTTATGGCACTCCAGAATTAGATGAAGATGACTTAGAAGCAGAATTGGATGCACTGGGTGATGAGCTTCTGGCTGATGAAGATAGTTCTTACTTGGATGAAGCAGCATCTGCACCTGCAATACCAGAAGGTGTTCCCACCGACACTAAAAACAAGGATGGAGTCCTGGTGGATGAATTCGGATTGCCACAGATCCCTGCTTCATAG

Related Sequences

XP_004838455.1 Protein

Chmp5 PREDICTED: charged multivesicular body protein 5 [Heterocephalus glaber]

Length: 219 aa      View alignments
>XP_004838455.1
MNRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKQGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPELDEDDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPAS