Sequence details NCBI ID: XM_004838390.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Aptx
Gene Name aprataxin
Entrez Gene ID 101719882

This gene is present in the GenAge database and has been identified as potentially important to ageing in humans.

Database interlinks

Part of NW_004624736.1 (Scaffold)

For more information consult the page for NW_004624736.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

APTX ENSCPOG00000005975 (Guinea pig)

Gene Details

aprataxin

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005393, Guinea pig)

Protein Percentage 90.77%
CDS Percentage 92.46%
Ka/Ks Ratio 0.27499 (Ka = 0.048, Ks = 0.1747)

APTX ENSG00000137074 (Human)

Gene Details

aprataxin

External Links

Gene Match (Ensembl Protein ID: ENSP00000369141, Human)

Protein Percentage 87.13%
CDS Percentage 90.94%
Ka/Ks Ratio 0.39682 (Ka = 0.0703, Ks = 0.1771)

Aptx ENSMUSG00000028411 (Mouse)

Gene Details

aprataxin

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000124264, Mouse)

Protein Percentage 83.93%
CDS Percentage 86.41%
Ka/Ks Ratio 0.27845 (Ka = 0.0979, Ks = 0.3516)

Aptx ENSRNOG00000006582 (Rat)

Gene Details

aprataxin (Aptx), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000046400, Rat)

Protein Percentage 81.46%
CDS Percentage 84.09%
Ka/Ks Ratio 0.25333 (Ka = 0.1151, Ks = 0.4542)

Genome Location

Sequence Coding sequence

Length: 1029 bp    Location: 37757746..37729731   Strand: -
Raw sequence   
>XM_004838390.1
ATGATGCGGGTGTGCTGGTTGGTGAGACAGGACAGCCAGCACCAGCGAATCAAACTTCCACATTCAGAAGCAATTGTGATTGGGCGTGGCCCAGAAACCAAGATCACTGATAAGAAATGTTCTCGACAGCAAGTACAGTTGAAAGCAGAGTGTAACAAAGGTTACGTCAAAGTAAAGCAGGTAGGGGTCAATCCCACCAGCATTGACTCAGTCATAATTGGAAAGGACCAAGAGATGAAACTGCAGCCTGGCCAGGTTCTCCACATGGTGAATGAACTTTATCCGTATATTATAGAGTTCGAGGAAAAGACAAAGAGCCCTGGCCTAGAAACACACAGGAAGAGAAAGAGGTTAAGCAACAGAGATTTTATAGAAAGGGATGCTGCTCAGGAAGCTGCCTCTGGGACAGGGCTGGAACCTGAGAGCAGTCCCAACCAATGCTGTGTGGCCCCAAAGAAGGGGAAAGATGGATCTACCAAAAAGAAACCACTGAGCCATTGGAGTCAAGGCTTGAAGACGTCTATGCAGGACCCCAAAATGCAGGTTTACAAAGATGAGCATGTGGTGGTGATTAAGGATAAATACCCTAAGGCCCGTTACCACTGGCTGGTCTTACCATGGGCCTCCATTTCCAGTCTGAAGGCTGTGACTAGAGAACATCTTGAACTCCTCAAACATATGCACACTGTAGGAGAAAAGGTGATGGCAGATTTTGCTGGATCCAGCAAGCTCCCCTTCCGATTGGGCTACCATGCCATTCCCAGCATGAGTCATGTACACCTTCATGTAATCAGTCAGGATTTTGATTCTCCTTGCCTTAAAAGCAAAAAGCATTGGAATTCTTTCAATACAGAATACTTCCTAGAATCACAAGCTGTGATCCAGATGGTACAAGAGGCTGGCAGAGTGACTGTCAGAGAAGGGACATCTGAGCTCTTGAAGTTGCCCCTTCATTGTCATGAGTGCCAGCAGCTGCTGCCTTCCATTCCTCAGCTGAAAGAGCATCTCAGGAAGCACTGGATGAAGTGA

Related Sequences

XP_004838447.1 Protein

Aptx PREDICTED: aprataxin [Heterocephalus glaber]

Length: 342 aa      View alignments
>XP_004838447.1
MMRVCWLVRQDSQHQRIKLPHSEAIVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSIDSVIIGKDQEMKLQPGQVLHMVNELYPYIIEFEEKTKSPGLETHRKRKRLSNRDFIERDAAQEAASGTGLEPESSPNQCCVAPKKGKDGSTKKKPLSHWSQGLKTSMQDPKMQVYKDEHVVVIKDKYPKARYHWLVLPWASISSLKAVTREHLELLKHMHTVGEKVMADFAGSSKLPFRLGYHAIPSMSHVHLHVISQDFDSPCLKSKKHWNSFNTEYFLESQAVIQMVQEAGRVTVREGTSELLKLPLHCHECQQLLPSIPQLKEHLRKHWMK