Details from NCBI annotation

Gene Symbol Ttc39b
Gene Name tetratricopeptide repeat domain 39B, transcript variant X7
Entrez Gene ID 101710731

Database interlinks

Part of NW_004624736.1 (Scaffold)

For more information consult the page for NW_004624736.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TTC39B ENSCPOG00000004887 (Guinea pig)

Gene Details

tetratricopeptide repeat domain 39B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004399, Guinea pig)

Protein Percentage 93.38%
CDS Percentage 93.49%
Ka/Ks Ratio 0.19323 (Ka = 0.033, Ks = 0.1708)

TTC39B ENSG00000155158 (Human)

Gene Details

tetratricopeptide repeat domain 39B

External Links

Gene Match (Ensembl Protein ID: ENSP00000422496, Human)

Protein Percentage 90.2%
CDS Percentage 89.26%
Ka/Ks Ratio 0.14651 (Ka = 0.05, Ks = 0.3411)

Ttc39b ENSMUSG00000038172 (Mouse)

Gene Details

tetratricopeptide repeat domain 39B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000099887, Mouse)

Protein Percentage 88.85%
CDS Percentage 85.36%
Ka/Ks Ratio 0.1134 (Ka = 0.0625, Ks = 0.5507)

Ttc39b ENSRNOG00000042603 (Rat)

Gene Details

tetratricopeptide repeat domain 39B (Ttc39b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000055409, Rat)

Protein Percentage 89.18%
CDS Percentage 85.97%
Ka/Ks Ratio 0.11663 (Ka = 0.0594, Ks = 0.509)

Genome Location

Sequence Coding sequence

Length: 1809 bp    Location: 19480110..19349491   Strand: -
>XM_004838311.1
ATGGCGCTCGTGGGCAACCAAGTGGACCTGGAAGCGGACGAGGACATTTTTGAAGATGCCTTGGAAATCATGCCTATATCTTCTCACTCAGATATGGCAACAAGCAACTTTCACTTTTCATCATGTGATCCCAGACGGACACCCAGACAGGGCAGAGGAGCTGATGTGAGCAGTTCATCATCAACCAAGGTGGATCTCAAGAGTGGTCTAGAAGAATGCGCAGTGGCATTGAACTTATTTCTAAGTAACAAATTTACAGATGCTTTAGAATTGCTTCGTCCATGGGCCAAGGAGAGTATGTACCACGCTTTGGGCTACAGTACCATTGTGGTGCTGCAGGCTGTCATGACTTTTGAGCAGCAGGACATTCAAAATGGCATTTCTGCCATGAAGGACGCCTTGCAAACCTGCCAGAAATACAGGAAAAAATGCACAGTTGTAGAATCTTTCTCGAGTCTCCTTTCTCGAGGATCACTAGAACAGCTGAGTGAAGAGGAAATGCATGCTGAAATCTGTTACGCCGAGTGTCTCCTACAGAAAGCAGCGCTCACATTTGTGCAGGATGAAAATATGATCAACTTCATCAAAGGTGGATTGAAAATTAGAACAAGTTACCAAATATATAAAGAATGTCTTTCTATTCTGCATGTAATTCAGAAGAACAAACATGAACAAGAGTTCTTCTATGAGTTTGAAGGGGGCGTCAAGCTTGGAACAGGGGCCTTTAATTTGATGCTGTCCCTTTTACCAGCAAGGATTATCAGATTGCTAGAATTTATTGGATTTTCTGGAAACAGGGAGCTGGGCCTCCTGCAGCTTCGGGAAGGTGCGTCAGGGAGAAGCATGCGGTCTCCGCTGTGTTGCCTCACCATCCTGGCGTTCCATACCTACATCTCTCTGATACTTGGTACAGGAGAAGTGAATGTTGTGGAAGCAGAGAATCTCCTTGCACCCTTCCTCCAGCAGTTTCCAAATGTATGCTTAGTATTTCAAGCACAAGAGATATTTCAAAAATGCATTTCAGTTCAAGAAGAATGGAAACAGTTTCACCATCTCTGTTACTGGGAGCAAATGTGGATTAATGTATTTCTACAAAACTGGGTGCAGGCGTATTACTATTCAGATCTCCTTTGCAAAGAGAGTAAATGGTCCAAGGCAACATATGTATTCTTGAAGGCAGCAATTTTGAGTATGCTTCCAGAGGAAGATGTATTAGCAACTAATGAGAATGTGATAGCTTTATTCAGACAGGTGGATGGCTTGAAGCAGAGAATTGCTGGTAAATCTCTCCCGACTGAGAAGTTTGCTGTGAGGAAGGCTCGGCGCTACTCCCCCTCCTTGCCTGGCCCTGTGAAGCTTGTCTTGCCAGCCCTGGAAATGATGTATGTCTGGAATGGCTTTTCAATAGTGGGGAAAAGAAAAGACCTTTGTGAAAATCTCTTGGTAACCATTGAAAAGGCTGAGGCAGCTTTAGAAAATGAAAGCTTTAGCGATTATTCTGTGGATGACGAGTGCTTGGTGAAGTTACTTAAAGGGTGCTGCCTGAAGAACTTACAGCGGCCCTTGCAAGCTGAACTGTGCTTCAATCATGTTGTGGAAAGCGAAAAGCTGCTAAAATATGACCACTACTTAGTGCCATTCACTCTGTTTGAGTTGGCCTTTTTGTATAAAAGCCAAGGGGAAATTGACAAAGCCATAAAGGTCCTAGAGACTGCAAGAAACAACTACAAAGATTACTCCTTGGAGTCCAGACTACACTTCAGAATTCAGGCAGCTCTTCACCTCTGGAGAAAACCCTCCTCAGATTGA

Related Sequences

XP_004838368.1 Protein

Ttc39b PREDICTED: tetratricopeptide repeat protein 39B isoform X7 [Heterocephalus glaber]

Length: 602 aa      View alignments
>XP_004838368.1
MALVGNQVDLEADEDIFEDALEIMPISSHSDMATSNFHFSSCDPRRTPRQGRGADVSSSSSTKVDLKSGLEECAVALNLFLSNKFTDALELLRPWAKESMYHALGYSTIVVLQAVMTFEQQDIQNGISAMKDALQTCQKYRKKCTVVESFSSLLSRGSLEQLSEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKECLSILHVIQKNKHEQEFFYEFEGGVKLGTGAFNLMLSLLPARIIRLLEFIGFSGNRELGLLQLREGASGRSMRSPLCCLTILAFHTYISLILGTGEVNVVEAENLLAPFLQQFPNVCLVFQAQEIFQKCISVQEEWKQFHHLCYWEQMWINVFLQNWVQAYYYSDLLCKESKWSKATYVFLKAAILSMLPEEDVLATNENVIALFRQVDGLKQRIAGKSLPTEKFAVRKARRYSPSLPGPVKLVLPALEMMYVWNGFSIVGKRKDLCENLLVTIEKAEAALENESFSDYSVDDECLVKLLKGCCLKNLQRPLQAELCFNHVVESEKLLKYDHYLVPFTLFELAFLYKSQGEIDKAIKVLETARNNYKDYSLESRLHFRIQAALHLWRKPSSD